View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7224_high_14 (Length: 222)

Name: NF7224_high_14
Description: NF7224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7224_high_14
NF7224_high_14
[»] chr7 (11 HSPs)
chr7 (1-201)||(4863742-4863942)
chr7 (45-201)||(4672540-4672696)
chr7 (45-201)||(4630791-4630947)
chr7 (45-201)||(4643535-4643691)
chr7 (31-201)||(4697265-4697435)
chr7 (21-193)||(4783918-4784090)
chr7 (101-201)||(4636777-4636877)
chr7 (51-129)||(4653390-4653468)
chr7 (21-154)||(4816386-4816519)
chr7 (45-120)||(4712231-4712306)
chr7 (23-120)||(4846171-4846268)
[»] chr4 (1 HSPs)
chr4 (45-193)||(18925825-18925973)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 4863742 - 4863942
Alignment:
Q  1 ggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863742 ggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagt 4863841  T
Q  101 ataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863842 ataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctcta 4863941  T
Q  201 t 201  Q
    |    
T  4863942 t 4863942  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 4672540 - 4672696
Alignment:
Q  45 gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgta 144  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  ||||  |||| ||||||||||||||||||||||||||||| ||| ||||| | ||    
T  4672540 gaaagattaactctttcaatttgagagcttccttcttgagagtacatagtgacagcataatccttatgaacaggaaccatacgagcaccactccaactta 4672639  T
Q  145 tcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctat 201  Q
    | ||||||||  |||||||||||| | | ||| |||| |||||||||||||||||||    
T  4672640 taacatcagctctttcctcagccagagtgttagctataaaaatctgaaaggctctat 4672696  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 4630791 - 4630947
Alignment:
Q  45 gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgta 144  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  |||  ||||  |||||||||||||  |||||||||||||| ||| ||||||| ||    
T  4630791 gaaagattaactctttcaatttgagagcttccttcttgagagtacataagcacaacataatccttatgagtaggaaccatacgagcaccactccacctta 4630890  T
Q  145 tcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctat 201  Q
    |||||||||| ||||||||||| | | | ||| ||||||||||||||||| ||||||    
T  4630891 tcacatcagctttttcctcagctagaatgttagctatgaaaatctgaaagactctat 4630947  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 4643535 - 4643691
Alignment:
Q  45 gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgta 144  Q
    ||||| ||| ||||||||| ||||||||||||||||| | |||  |||||||  | ||||||||||||||||||||||| ||||| ||| ||||||| ||    
T  4643535 gaaagattagctctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatgaacaggaaccaaacgagcaccactccacccta 4643634  T
Q  145 tcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctat 201  Q
    ||||||| || ||||| ||| ||| | | ||| ||||||| ||||||||| ||||||    
T  4643635 tcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctat 4643691  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 4697435 - 4697265
Alignment:
Q  31 gttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgaga 130  Q
    |||||| |||||  ||||| |||| |||||||||||||||||||||||||| |||||  |||||||||| |||||| |||||||||||||||||| |||     
T  4697435 gttgtagcttgattgaaagattaagtctttcaatttgagagcttccttcttgagagtgcatagacacagcataatctttatgaacaggaaccataggagt 4697336  T
Q  131 accgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctat 201  Q
    |   |||||    |||||||||||||||  ||| |||| | ||||| ||||||| || |||||| ||||||    
T  4697335 agtactccaagaaatcacatcagcgtttatctccgccaaagtattagctatgaatatttgaaagactctat 4697265  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 4784090 - 4783918
Alignment:
Q  21 tttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaa 120  Q
    ||||||||| |||||| ||||| |||||| |||||| |||||||||||||||||||  ||| |||    |||| ||| | ||||||||||||||||||||    
T  4784090 tttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaa 4783991  T
Q  121 ccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaa 193  Q
    ||| | ||| ||| ||||||| ||||||||||||    |  ||||||| ||||| | ||||||||||||||||    
T  4783990 ccaaaggagcaccactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaa 4783918  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 4636777 - 4636877
Alignment:
Q  101 ataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctcta 200  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||||||| || ||||| ||| ||| | | ||| ||||||| ||||||||| |||||    
T  4636777 ataatccttatgaacaggaaccatacgagcaccactccaccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactcta 4636876  T
Q  201 t 201  Q
    |    
T  4636877 t 4636877  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 4653390 - 4653468
Alignment:
Q  51 ttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgag 129  Q
    ||||||||||||||||||| |||||||||||||||||  |||| ||||  |||||||||||||||||||| || |||||    
T  4653390 ttaactctttcaatttgagtgcttccttcttcagagtgcatagtcacaacataatccttatgaacaggaatcaaacgag 4653468  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 4816519 - 4816386
Alignment:
Q  21 tttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaa 120  Q
    ||||||||| | |||| ||||| |||||| |||||| |||||||||||||||||||  | | |||    |||| ||| | ||||||||||||||||||||    
T  4816519 tttggtaatcgatgtagcttgatcgaaagattaactttttcaatttgagagcttccgccatgagaacccatagtcacggcataatccttatgaacaggaa 4816420  T
Q  121 ccatacgagaaccgctccaccgtatcacatcagc 154  Q
    | | | ||| ||| ||||||| ||||||||||||    
T  4816419 caaaaggagcaccactccaccatatcacatcagc 4816386  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 4712306 - 4712231
Alignment:
Q  45 gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaa 120  Q
    |||||||||||||||||||||| ||||||||| | || |||||  ||   ||||| ||||||||||||||||||||    
T  4712306 gaaaggttaactctttcaatttcagagcttccattttgagagtacattttcacagcataatccttatgaacaggaa 4712231  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 4846268 - 4846171
Alignment:
Q  23 tggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaa 120  Q
    ||||||| |||| | |||||  ||||| |||||||||||||||| ||||||||| | || |||||  ||   ||||| ||||||||||||||||||||    
T  4846268 tggtaatcgttgaagcttgattgaaagattaactctttcaatttcagagcttccattttgagagtagattttcacagcataatccttatgaacaggaa 4846171  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 18925973 - 18925825
Alignment:
Q  45 gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgta 144  Q
    ||||| |||||||||| |||||| ||||||||||||  |||||  |||| ||||  ||||||||||||||||||||||||||||| ||| |||||  | |    
T  18925973 gaaagattaactcttttaatttgcgagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaaccatacgagcaccactccaatgaa 18925874  T
Q  145 tcacatcagcgttttcctcagccatactattaactatgaaaatctgaaa 193  Q
    |||||||||| |||   ||||||| | ||| | |||| |||||||||||    
T  18925873 tcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaa 18925825  T

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