View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7224_high_5 (Length: 495)

Name: NF7224_high_5
Description: NF7224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7224_high_5
NF7224_high_5
[»] chr4 (5 HSPs)
chr4 (20-329)||(20132845-20133157)
chr4 (355-429)||(20133189-20133263)
chr4 (429-484)||(20135519-20135573)
chr4 (193-278)||(56462581-56462665)
chr4 (225-297)||(21014425-21014497)
[»] chr1 (3 HSPs)
chr1 (356-495)||(15741311-15741450)
chr1 (214-297)||(15741203-15741286)
chr1 (442-483)||(5424668-5424709)
[»] scaffold0758 (1 HSPs)
scaffold0758 (360-484)||(4763-4887)
[»] chr3 (6 HSPs)
chr3 (360-494)||(49321880-49322014)
chr3 (192-297)||(48050524-48050629)
chr3 (245-327)||(49321766-49321848)
chr3 (439-484)||(15086027-15086072)
chr3 (445-494)||(15267103-15267152)
chr3 (216-297)||(50370620-50370700)
[»] chr8 (3 HSPs)
chr8 (216-325)||(45311515-45311624)
chr8 (192-296)||(30446129-30446233)
chr8 (240-276)||(11623993-11624029)
[»] chr6 (5 HSPs)
chr6 (241-329)||(24207345-24207433)
chr6 (359-418)||(24207461-24207519)
chr6 (443-484)||(26590264-26590305)
chr6 (438-494)||(24207511-24207567)
chr6 (445-484)||(2576178-2576217)
[»] chr5 (3 HSPs)
chr5 (440-494)||(702900-702954)
chr5 (443-484)||(28096146-28096187)
chr5 (193-297)||(33019797-33019901)
[»] chr7 (3 HSPs)
chr7 (239-297)||(13280582-13280640)
chr7 (447-484)||(28592497-28592534)
chr7 (440-484)||(3126833-3126877)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 20132845 - 20133157
Alignment:
Q  20 ttttccttttgccataatatatcatgactgatattagcatatagttctgtt--ttnnnnnnnntaacgtataattttgtatactacatcatcagggctct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||        |||||||||||||||||||| |||||||||||||| |    
T  20132845 ttttccttttgccataatatatcatgactgatattagcatatagttttgttctttaaaaaaaataacgtataattttgtataccacatcatcagggctgt 20132944  T
Q  118 atctgtgacagagcgagaagtgcgatcattctaagccttaacagttaagttgaaatttgatcccaacnnnnnnnt-taggggttcattaggtccagcaaa 216  Q
    ||||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  20132945 atctgtggcagagcgagaagtgcgatcatcctaaaccttaaaagttaagttgaaatttgatcccaacaacaaaaactaggggttcattaggtccagcaaa 20133044  T
Q  217 attatttaaattctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatggtacaatgttttcgcgaaa 316  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||    
T  20133045 attatttaaattctaaaggaatgtgtggtagttagtaatgagcttatttctttgttgaaccagttaaaatatattgtgatggtacaatgtcttcgcgaaa 20133144  T
Q  317 gcatgcatctggt 329  Q
    |||||||||||||    
T  20133145 gcatgcatctggt 20133157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 355 - 429
Target Start/End: Original strand, 20133189 - 20133263
Alignment:
Q  355 cagtgttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaagacacttaaaata 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20133189 cagtgttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaagagacttaaaata 20133263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 484
Target Start/End: Original strand, 20135519 - 20135573
Alignment:
Q  429 agttatggaagtagaagaagataatcttgaacaatctaataaaaatttgaatgatg 484  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  20135519 agttatggaagtaaaagaagataatcttgaagaatctaat-aaaatttgaatgatg 20135573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 56462581 - 56462665
Alignment:
Q  193 taggggttcattaggtccagcaaaattatttaaattctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgaccca 278  Q
    |||| |||||||||| |||  ||||||| ||||||| |||| | |||||||||||||||||||   |||  |||||||||||||||    
T  56462581 taggagttcattaggcccaa-aaaattacttaaattttaaagggatgtgtggttgttagtaataggctttgttctttgttgaccca 56462665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 21014425 - 21014497
Alignment:
Q  225 aattctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatg 297  Q
    ||||||||| | ||||||| || ||||||||  ||||| ||||||||||||| | | | ||||||||||||||    
T  21014425 aattctaaagggatgtgtgattattagtaatcgacttagttctttgttgacctatttataatttattgtgatg 21014497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 356 - 495
Target Start/End: Original strand, 15741311 - 15741450
Alignment:
Q  356 agtgttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaagacacttaaaatagttatggaagtagaagaagataatct 455  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||| || | |||||||||||||||||||||||    
T  15741311 agtgttagaattaacaaaatcacaaaaggaagaacttaaatttgttagtaaacaaggagaagagacttaaagtaataatggaagtagaagaagataatct 15741410  T
Q  456 tgaacaatctaataaaaatttgaatgatgtccatctcatt 495  Q
    ||||||||||||| ||||||||||||||| | ||||||||    
T  15741411 tgaacaatctaatgaaaatttgaatgatgacaatctcatt 15741450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 15741203 - 15741286
Alignment:
Q  214 aaaattatttaaattctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatg 297  Q
    ||||||| | |||||||||| |||   |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  15741203 aaaattactgaaattctaaaggaagacgtggttgttagtgatgaacttatttctttgttgacccagttataatttattgtgatg 15741286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 5424668 - 5424709
Alignment:
Q  442 gaagaagataatcttgaacaatctaataaaaatttgaatgat 483  Q
    ||||||||| ||||||||||||||||| || |||||||||||    
T  5424668 gaagaagatgatcttgaacaatctaatgaacatttgaatgat 5424709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 360 - 484
Target Start/End: Original strand, 4763 - 4887
Alignment:
Q  360 ttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaagacacttaaaatagttatggaagtagaagaagataatcttgaa 459  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||||  ||||||||| | ||||||||| |||||||||||||||||    
T  4763 ttagaattaacaaaatcacaaaagtgagaacataaatttgttagtaaacgagtagaagagccttaaaataatgatggaagtaaaagaagataatcttgaa 4862  T
Q  460 caatctaataaaaatttgaatgatg 484  Q
    ||||||||| ||||||| |||||||    
T  4863 caatctaatgaaaatttaaatgatg 4887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 360 - 494
Target Start/End: Original strand, 49321880 - 49322014
Alignment:
Q  360 ttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaagacacttaaaatagttatggaagtagaagaagataatcttgaa 459  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||  ||||||| | | ||| |||||||||||||||| ||||||    
T  49321880 ttagaattaacaaaatcacaaaaaggataacttaaatttgttagtaaatgagtagaagagtcttaaaacaatgatgaaagtagaagaagataaccttgaa 49321979  T
Q  460 caatctaataaaaatttgaatgatgtccatctcat 494  Q
    || |||||| ||||||||||||||| | |||||||    
T  49321980 cattctaatgaaaatttgaatgatgacaatctcat 49322014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 48050524 - 48050629
Alignment:
Q  192 ttaggggttcattaggtccagcaaaattatttaaattctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttatt 291  Q
    |||| ||||||||||| |||  ||||||| |||||||||||  ||||||||||||| |||||| ||  ||| ||||||||||||||| | | |||||||     
T  48050524 ttagaggttcattaggcccaaaaaaattacttaaattctaatggaatgtgtggttgatagtaacgagtttagttctttgttgacccatttataatttatc 48050623  T
Q  292 gtgatg 297  Q
    ||||||    
T  48050624 gtgatg 48050629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 49321766 - 49321848
Alignment:
Q  245 ttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatggtacaatgttttcgcgaaagcatgcatctg 327  Q
    |||||| ||||||  | |||| |||||||||||||| | |||||||||| |||||| ||||||||||| ||| ||||||||||    
T  49321766 ttgttaataatgagttcatttttttgttgacccagttataatttattgttatggtataatgttttcgcaaaaacatgcatctg 49321848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 15086072 - 15086027
Alignment:
Q  439 gtagaagaagataatcttgaacaatctaataaaaatttgaatgatg 484  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||    
T  15086072 gtagatgaagataatcttgaacaatctaatgaaaatttgaatgatg 15086027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 15267152 - 15267103
Alignment:
Q  445 gaagataatcttgaacaatctaataaaaatttgaatgatgtccatctcat 494  Q
    ||||| |||||||||||||||||| ||||||||||||||| | |||||||    
T  15267152 gaagacaatcttgaacaatctaatgaaaatttgaatgatgacaatctcat 15267103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 50370620 - 50370700
Alignment:
Q  216 aattatttaaattctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatg 297  Q
    ||||| |||||||||||  |||||||||||||||||||||   |||| ||||||| ||||| | | | ||||||||||||||    
T  50370620 aattacttaaattctaatagaatgtgtggttgttagtaataggcttagttctttg-tgaccaatttataatttattgtgatg 50370700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 216 - 325
Target Start/End: Original strand, 45311515 - 45311624
Alignment:
Q  216 aattatttaaattctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatggtacaatgttttcgcgaa 315  Q
    ||||| ||||| |||||| ||| | |||||||||||||||||| |||||||||||||||||  || | |||||||||||||| || ||| ||||||||||    
T  45311515 aattacttaaactctaaaggaaggggtggttgttagtaatgaatttatttctttgttgaccttgttataatttattgtgatgatataatattttcgcgaa 45311614  T
Q  316 agcatgcatc 325  Q
    ||||||||||    
T  45311615 agcatgcatc 45311624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 30446233 - 30446129
Alignment:
Q  192 ttaggggttcattaggtccagcaaaattatttaaattctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttatt 291  Q
    |||||||||||||||| | |  ||||||| |||||||||||| | |||||||||||||||||||   |||| |||||| |||||| | | | ||||||||    
T  30446233 ttaggggttcattaggcctaaaaaaattacttaaattctaaagggatgtgtggttgttagtaatatgcttagttctttattgacctatttataatttatt 30446134  T
Q  292 gtgat 296  Q
    |||||    
T  30446133 gtgat 30446129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 11624029 - 11623993
Alignment:
Q  240 tgtggttgttagtaatgaacttatttctttgttgacc 276  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  11624029 tgtggttgttagtaatggacttagttctttgttgacc 11623993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 24207345 - 24207433
Alignment:
Q  241 gtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatggtacaatgttttcgcgaaagcatgcatctggt 329  Q
    |||||| ||||||||||||||||||||||||||||| ||| | | | || |||||||||| ||| ||| || |||||||||||| ||||    
T  24207345 gtggttattagtaatgaacttatttctttgttgacctagttatattatactgtgatggtataatatttccgtgaaagcatgcatttggt 24207433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 24207461 - 24207519
Alignment:
Q  359 gttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaaga 418  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||||| |||| ||||    
T  24207461 gttagaatcaacaaaatcacaaaaggg-gaacttaaatttgttagtaaacgagtaaaaga 24207519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 484
Target Start/End: Original strand, 26590264 - 26590305
Alignment:
Q  443 aagaagataatcttgaacaatctaataaaaatttgaatgatg 484  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  26590264 aagaagataatcttgaacaatctaatgaaaattggaatgatg 26590305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 494
Target Start/End: Original strand, 24207511 - 24207567
Alignment:
Q  438 agtagaagaagataatcttgaacaatctaataaaaatttgaatgatgtccatctcat 494  Q
    |||| ||||||| | ||||||||||||||||||||||||||| |||| | |||||||    
T  24207511 agtaaaagaagaaactcttgaacaatctaataaaaatttgaacgatgacaatctcat 24207567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 484
Target Start/End: Complemental strand, 2576217 - 2576178
Alignment:
Q  445 gaagataatcttgaacaatctaataaaaatttgaatgatg 484  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  2576217 gaagataatcttgaacaatctaatgaaaattggaatgatg 2576178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 494
Target Start/End: Original strand, 702900 - 702954
Alignment:
Q  440 tagaagaagataatcttgaacaatctaataaaaatttgaatgatgtccatctcat 494  Q
    |||||||| |||||||||||||||||||| |||||| |||||||| | |||||||    
T  702900 tagaagaaaataatcttgaacaatctaatgaaaattcgaatgatgacaatctcat 702954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 484
Target Start/End: Original strand, 28096146 - 28096187
Alignment:
Q  443 aagaagataatcttgaacaatctaataaaaatttgaatgatg 484  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  28096146 aagaagataatcttgaacaatctaatgaaaattggaatgatg 28096187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 33019901 - 33019797
Alignment:
Q  193 taggggttcattaggtccagcaaaattatttaaattctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattg 292  Q
    ||||||||||||||||||   ||||||| |||||||| |||   | ||||| |||| |||||| || ||| |||||||||||| || | | ||||||| |    
T  33019901 taggggttcattaggtcctaaaaaattacttaaattccaaattgaagtgtgattgtaagtaataaatttagttctttgttgactcatttataatttatcg 33019802  T
Q  293 tgatg 297  Q
    |||||    
T  33019801 tgatg 33019797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 13280582 - 13280640
Alignment:
Q  239 gtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatg 297  Q
    |||| ||||||||||||| ||||| ||||||||||||| | | | ||||||||||||||    
T  13280582 gtgtagttgttagtaatggacttagttctttgttgaccaatttataatttattgtgatg 13280640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 484
Target Start/End: Complemental strand, 28592534 - 28592497
Alignment:
Q  447 agataatcttgaacaatctaataaaaatttgaatgatg 484  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  28592534 agataatcttgaaaaatctaatgaaaatttgaatgatg 28592497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 484
Target Start/End: Original strand, 3126833 - 3126877
Alignment:
Q  440 tagaagaagataatcttgaacaatctaataaaaatttgaatgatg 484  Q
    ||||||||| ||||||| |||||| |||||||||||||| |||||    
T  3126833 tagaagaagttaatcttaaacaatttaataaaaatttgattgatg 3126877  T

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