View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7224_high_9 (Length: 271)
Name: NF7224_high_9
Description: NF7224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7224_high_9 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 2517903 - 2518173
Alignment:
| Q |
1 |
tgaaaagtatttgagctgcagggatcaagctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517903 |
tgaaaagtatttgagctgcagggatcaagctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccac |
2518002 |
T |
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| Q |
101 |
aactttagacacaccacagccagctattggctgcaattatgcaaaaatcatcggtagctacacgacacaatttcgatgttgcaactattctttgattaat |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2518003 |
aactttagacacaccacagccagcaattggctgcaattatgcaaaaatcatcggtagctacacgacacaatttcaatgttgcaactattctttgattaat |
2518102 |
T |
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| Q |
201 |
ttcaatctcgacttaaaaataaaactaaaattctaatcacaagctacacatcaagggattttaagcccaaa |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2518103 |
ttcaatctcgacttaaaaataaaactaaaattctaatcacaagctacacatcaagggattttaagcccaaa |
2518173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 2507026 - 2507221
Alignment:
| Q |
1 |
tgaaaagtatttgagctgcagggatcaagctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccac |
100 |
Q |
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||||| ||||||| || |||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2507026 |
tgaaatgtatttgtgccgcagggatcaagctgtactcttcccaattagttatcccccacactatatcaccttccttataatctttgtgtccagattccac |
2507125 |
T |
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| Q |
101 |
aactttagacacaccacagccagctattggctgcaattatgcaaaaatcatcggtagctacacgacacaatttcgatgttgcaactattctttgatta |
198 |
Q |
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| T |
2507126 |
aactttagacacaccataaccagttaacggctgcaatta--caaaaatcatcagtaactgcacaatacaacttcaatattgcaattattctttgatta |
2507221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 2513692 - 2513892
Alignment:
| Q |
7 |
gtatttgagctgcagggatcaagctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccacaacttt |
106 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||| ||||||||||||||||||||||| | |||||| |
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| T |
2513692 |
gtatttgtgctgcagggatcaagctgtactcttcccaattagttatcccccacacgatatcaccttctttataatctttgtgtccagattctagaacttt |
2513791 |
T |
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| Q |
107 |
agacacaccacagccagctattggctgcaattatgcaaaaatcatcggtagctacacgacacaatttcgatgttgcaactattctttgattaatttcaat |
206 |
Q |
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| T |
2513792 |
agacacaccataaccagttatcggctgcaatta--caaaaatcatcagtagctgcacaatacaacctcaatattgcaattattctttgataagtttcaat |
2513889 |
T |
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| Q |
207 |
ctc |
209 |
Q |
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||| |
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| T |
2513890 |
ctc |
2513892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 2428531 - 2428420
Alignment:
| Q |
1 |
tgaaaagtatttgagctgcagggatcaagctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccac |
100 |
Q |
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|||||||||||||||||||||||| ||| || ||||||||||| ||||||| ||||| ||||||||| ||| |||||||||| ||||||||||| || |
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| T |
2428531 |
tgaaaagtatttgagctgcagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagattctac |
2428432 |
T |
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| Q |
101 |
aactttagacac |
112 |
Q |
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|||||||||||| |
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| T |
2428431 |
aactttagacac |
2428420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 1458824 - 1458713
Alignment:
| Q |
1 |
tgaaaagtatttgagctgcagggatcaagctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccac |
100 |
Q |
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|||||||||||||||||||||||| ||| || ||||||||||| ||||| | ||||| ||||||||| ||| |||||||||| ||||||||||| || |
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| T |
1458824 |
tgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatctggatgtccagattctac |
1458725 |
T |
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| Q |
101 |
aactttagacac |
112 |
Q |
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|||||||||||| |
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| T |
1458724 |
aactttagacac |
1458713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 2498093 - 2498231
Alignment:
| Q |
1 |
tgaaaagtatttgagctgcagggatcaagctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccac |
100 |
Q |
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||||||||||||||| || ||||| |||||||||||||||||| ||| || ||||| ||||||||||||||||||||||| ||||| ||||| | |
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| T |
2498093 |
tgaaaagtatttgagatgaagggaccaagctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatcaggatgtcctgattcaag |
2498192 |
T |
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| Q |
101 |
aactttagacacaccacagccagctattggctgcaatta |
139 |
Q |
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||||||||||| ||| | || |||||| ||||||||| |
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| T |
2498193 |
gactttagacaccccaaaacctgctattacctgcaatta |
2498231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 2431491 - 2431399
Alignment:
| Q |
20 |
agggatcaagctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccacaactttagacac |
112 |
Q |
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| T |
2431491 |
agggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagattctacaactttagacac |
2431399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 2434863 - 2434784
Alignment:
| Q |
33 |
tactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccacaactttagacac |
112 |
Q |
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||||||||||| ||||||| | ||| ||| ||||| ||| |||||||||| ||||||||||| |||||||||||||| |
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| T |
2434863 |
tactcttcccatttagtaagactccaaactgaatcatctttcttataatctggatgtccagattctacaactttagacac |
2434784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 50703478 - 50703558
Alignment:
| Q |
1 |
tgaaaagtatttgagctgcagggatcaagctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatc |
82 |
Q |
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||||||||||||||| | ||| | |||||||||||||||||| ||| || ||||| ||| ||||||||||||||||||| |
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| T |
50703478 |
tgaaaagtatttgagata-aggtaccaagctgtactcttcccatttacagaatccccaaacttaatcaccttccttataatc |
50703558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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