View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7224_low_10 (Length: 355)
Name: NF7224_low_10
Description: NF7224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7224_low_10 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 47383498 - 47383144
Alignment:
| Q |
1 |
ctaaacagactatggctcttaaaacaagtacacaatattacactggaagagactctggcaatgaatttggagcaccactactaccattgagcacaatcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47383498 |
ctaaacagactatggctcttaaaacaagtacacaatattacacaggaagagactctggcaatgaatttggagcaccactactaccattgagcacaatcac |
47383399 |
T |
|
| Q |
101 |
atttccatcggaatcagcatccactataacagagtcaccctctttaatctctctagcaagcatcttctcagccatgctgtcttccaaaagtcgcattata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47383398 |
atttccatcggaatcagcatccactataacagagtcaccctctttaatctctctagcaagcatcttctcagccatgttgtcttccaaaagtcgcattata |
47383299 |
T |
|
| Q |
201 |
gctcttcttagaggtctggcaccataactaggattataaccttcgtcaaccactctctccctaaatctctctgtcactgagagctcaatctctttggttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47383298 |
gctcttcttagaggtctggcaccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttt |
47383199 |
T |
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| Q |
301 |
tcagtctctcgaacacctccttcagcattatatcagctatctccttaacctccag |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47383198 |
tcagtctctcgaacacctccttcagcattatatcagctatctccttaacctccag |
47383144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 46 - 345
Target Start/End: Complemental strand, 47818524 - 47818226
Alignment:
| Q |
46 |
gaagagactctggcaatgaatttggagcaccactactaccattgagcacaatcacatttccatcggaatcagcatccactataacagagtcaccctcttt |
145 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
47818524 |
gaagagcctctggcaatgaatttgcagcaccactactaccattgagcacaatcacatttccatcagaatcagcatccactataa--gagtcgccctcttt |
47818427 |
T |
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| Q |
146 |
aatctctctagcaagcatcttctcagccatgctgtcttccaaaagtcgcattatagctcttcttagaggtctggcaccataactaggattataaccttcg |
245 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47818426 |
aatctctctagcaagcatcttctcagccatgatgtcttccaaaagttgcattatagctcttcttagaggtctggcaccataattaggattataaccttca |
47818327 |
T |
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| Q |
246 |
tcaaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagtctctcgaacacctccttcagc-attatatcagctatctcc |
344 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
47818326 |
tcgaccactctctccctaaatctctctgtcactgaaagctcaatctctttggttttcagtctctcgaacacctccttaagcaattatatcagctatctcc |
47818227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 82 - 354
Target Start/End: Complemental strand, 45116366 - 45116094
Alignment:
| Q |
82 |
taccattgagcacaatcacatttccatcggaatcagcatccactataacagagtcaccctctttaatctctctagcaagcatcttctcagccatgctgtc |
181 |
Q |
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|||||||||| ||||||||||| || ||||||||| |||||||||| || |||||||||||||| |||||||| || |||||||||||||||||||| || |
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| T |
45116366 |
taccattgagaacaatcacattaccctcggaatcaacatccactattacggagtcaccctctttgatctctctggcgagcatcttctcagccatgctatc |
45116267 |
T |
|
| Q |
182 |
ttccaaaagtcgcattatagctcttcttagaggtctggcaccataactaggattataaccttcgtcaaccactctctccctaaatctctctgtcactgag |
281 |
Q |
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|||||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||||||| ||||| ||| |
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| T |
45116266 |
ctccaaaagtcgcatgatggctcttcttagaggcctggctccatagctaggattataaccttcgtcaaccaccctgtccctaaatctttctgttacttga |
45116167 |
T |
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| Q |
282 |
agctcaatctctttggttttcagtctctcgaacacctccttcagcattatatcagctatctccttaacctcca |
354 |
Q |
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|| ||||| |||||| | |||||||||| ||||| ||| | |||||||| || ||||| ||||| ||||||| |
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| T |
45116166 |
agttcaatttctttgttcttcagtctctgaaacacttccctgagcattatgtctgctatttccttcacctcca |
45116094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 35 - 355
Target Start/End: Complemental strand, 40246178 - 40245858
Alignment:
| Q |
35 |
atattacactggaagagactctggcaatgaatttggagcaccactactaccattgagcacaatcacatttccatcggaatcagcatccactataacagag |
134 |
Q |
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||||||||| ||||||| ||||||||||||| |||||||||| ||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
40246178 |
atattacacaggaagagcatctggcaatgaatctggagcaccagtactaccgttgagtacaatcacgtttccatcagaatcagcatccactataacagag |
40246079 |
T |
|
| Q |
135 |
tcaccctctttaatctctctagcaagcatcttctcagccatgctgtcttccaaaagtcgcattatagctcttcttagaggtctggcaccataactaggat |
234 |
Q |
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|| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| ||||||||||||| |
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| T |
40246078 |
tcgccctctttaatctccctagcaagcatcttttcagccatgctgtcctccaaaagtcgcattatggctcgtcttagaggcctggccccataactaggat |
40245979 |
T |
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| Q |
235 |
tataaccttcgtcaaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagtctctcgaacacctccttcagcattatatc |
334 |
Q |
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| T |
40245978 |
tataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagtctctcgaacacctccttcagcattatatc |
40245879 |
T |
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| Q |
335 |
agctatctccttaacctccag |
355 |
Q |
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|||||||||||||||||||| |
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| T |
40245878 |
tgctatctccttaacctccag |
40245858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 40246227 - 40246195
Alignment:
| Q |
3 |
aaacagactatggctcttaaaacaagtacacaa |
35 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
40246227 |
aaacagactatggctcttaaaacaagtacacaa |
40246195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 34054593 - 34054687
Alignment:
| Q |
57 |
ggcaatgaatttggagcaccactactaccattgagcacaatcacatttccatcggaatcagcatccactataacagagtcaccctctttaatctc |
151 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054593 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
34054687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 355
Target Start/End: Original strand, 34054707 - 34054855
Alignment:
| Q |
206 |
tcttagaggtctggcaccataactaggattataaccttcgtcaaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt |
305 |
Q |
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|||||||||||||| |||||||||||||| |||||||| ||| || ||||||| |||||||||||||||||| || ||||||||||| | | ||||||| |
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| T |
34054707 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt |
34054805 |
T |
|
| Q |
306 |
ctctcgaacacctccttcagcattatatcagctatctccttaacctccag |
355 |
Q |
| |
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|||| |||| ||||||||||||||| | |||||| |||||| ||||| |
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|
| T |
34054806 |
ttctctgacacttccttcagcattatacaaactatctacttaacatccag |
34054855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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