View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7224_low_13 (Length: 275)
Name: NF7224_low_13
Description: NF7224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7224_low_13 |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 25928076 - 25928335
Alignment:
| Q |
1 |
tggtgacagtttgaactcgaaattattgacaagaacaccaagaacaatcttaatttctgtcagggtaaagttttggcctaagcaatgtcgacttccatat |
100 |
Q |
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| T |
25928076 |
tggtgacagtttgaactcgaaattattgacaagaagaccaagaacaatcttaatttctgtcagggtaaagttttggcctaagcaatgtcgacttccatat |
25928175 |
T |
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| Q |
101 |
ccaaatggtagataagcttgaggatacttacaagctccagaaagaccattagcaaatctttctggcttgaattctgtagcatccggtccccaattatcag |
200 |
Q |
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| T |
25928176 |
ccaaatggtagataagcttgaggatacttacaagctccagaaagaccattagcaaatctttctggcttgaattctgtagcatccggtccccaattatcag |
25928275 |
T |
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| Q |
201 |
tgtcgcgatgcagcaatgggacgaacatccatatgtagagtcctttagggagaactaagt |
260 |
Q |
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| T |
25928276 |
tgtcgcgatgcagcaatgggacgaacatccatatgtagagtcctttagggagaactaagt |
25928335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 2097 - 2270
Alignment:
| Q |
1 |
tggtgacagtttgaactcgaaattattgacaagaacaccaagaacaatcttaatttctgtcagggtaaagttttggcctaagcaatgtcgacttccatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2097 |
tggtgacagtttgaactcgaaattattgacaagaagaccaagaacaatcttaatttctgtcagggtaaagttttggcctaagcaatgtcgacttccatat |
2196 |
T |
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| Q |
101 |
ccaaatggtagataagcttgaggatacttacaagctccagaaagaccattagcaaatctttctggcttgaattc |
174 |
Q |
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| T |
2197 |
ccaaatggtagataagcttgaggatacttacaagctccagaaagaccattagcaaatctttctggcttgaattc |
2270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 26135393 - 26135234
Alignment:
| Q |
53 |
atttctgtcagggtaaagttttggcctaagcaatgtcgacttccatatccaaatggtagataagcttgaggatacttacaagctccagaaagaccattag |
152 |
Q |
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|||||||| | || ||||||||| |||| ||||||||||| ||| ||||||||||| ||| || |||||||||||||| | | |||||| ||| |||| |
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| T |
26135393 |
atttctgtaatggaaaagttttgacctagacaatgtcgactcccaagtccaaatggtatatatgcctgaggatacttacatgatgcagaaacaccgttag |
26135294 |
T |
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| Q |
153 |
caaatctttctggcttgaattctgtagcatccggtccccaattatcagtgtcgcgatgca |
212 |
Q |
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| T |
26135293 |
caaatctctctggattgaactttgtagcatctggtccccaattatcagcgtctcgatgca |
26135234 |
T |
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