View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7224_low_18 (Length: 238)
Name: NF7224_low_18
Description: NF7224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7224_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24539027 - 24538805
Alignment:
| Q |
1 |
ttaggtatttgaagattcttctttttatagtcttcttgaaagtaaattttataggctttgaataactttttctgctatatgtttggcagtgcgcgtttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24539027 |
ttaggtatttgaagattcttctttttatagtcttcttgaaagtaaattttataggctttgaataactttttctgctatatgtttggcagtgcgcgtttgg |
24538928 |
T |
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| Q |
101 |
agtgcaatgatttctgaagctggcataatcttgtttgagtagatgcttggggttggggcttcataaaaaagataacatttaaagcaaaacatacaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24538927 |
agtgcaatgatttctgaagctggcataatcttgtttgagtagatgcttggggttggggcttcataaaaaagataacatttaaagcaaaacatacaatttt |
24538828 |
T |
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| Q |
201 |
gttacaacttttcaagcaacttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
24538827 |
gttacaacttttcaagcaacttt |
24538805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 26035671 - 26035810
Alignment:
| Q |
1 |
ttaggtatttgaagattcttctttttatagtcttcttgaaagtaaattttataggctttgaataactttttctgctatatgtttggcagtgc-----gcg |
95 |
Q |
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||||||||||| ||||||| ||||| |||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| | | |
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| T |
26035671 |
ttaggtatttgcagattctaatttttc-agtcttgttggcagtaaattttacaggctttgaataactttttctagtatatgtttggcagtgcagtgcgtg |
26035769 |
T |
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| Q |
96 |
tttggagtgcaatgatttctgaagctggcataatcttgttt |
136 |
Q |
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| T |
26035770 |
tttggagtgcaatgatttctgaagctggcagaatcatgttt |
26035810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 26030507 - 26030567
Alignment:
| Q |
56 |
ctttgaataactttttctgctatatgtttggcagtgcgcgtttggagtgcaatgatttctg |
116 |
Q |
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|||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||| |
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| T |
26030507 |
ctttgaatgactttttctgttatatgtttgacagtgcgcgtttggaatgcaatgatttctg |
26030567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 20509413 - 20509458
Alignment:
| Q |
56 |
ctttgaataactttttctgctatatgtttggcagtgcgcgtttgga |
101 |
Q |
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| T |
20509413 |
ctttgaataactttttcggctaaatgtttggcagtgcatgtttgga |
20509458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 25028376 - 25028316
Alignment:
| Q |
41 |
agtaaattttataggctttgaataactttttctgctatatgtttggcagtgcgcgtttgga |
101 |
Q |
| |
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|||||| ||| | ||| ||||||||| |||||||||| ||||||||||||| || |||||| |
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| T |
25028376 |
agtaaaatttgtgggcattgaataacattttctgctaaatgtttggcagtgtgcatttgga |
25028316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 17775889 - 17775923
Alignment:
| Q |
56 |
ctttgaataactttttctgctatatgtttggcagt |
90 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
17775889 |
ctttgaataactttttctgctaaatgtttggcagt |
17775923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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