View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7224_low_19 (Length: 236)

Name: NF7224_low_19
Description: NF7224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7224_low_19
NF7224_low_19
[»] chr4 (14 HSPs)
chr4 (16-223)||(53127929-53128136)
chr4 (65-156)||(33414019-33414110)
chr4 (42-138)||(16457911-16458009)
chr4 (65-138)||(21433923-21433996)
chr4 (71-155)||(2324780-2324864)
chr4 (74-150)||(45654049-45654125)
chr4 (42-120)||(993210-993288)
chr4 (71-132)||(2247635-2247696)
chr4 (42-150)||(19382290-19382393)
chr4 (74-143)||(17181264-17181333)
chr4 (66-143)||(25592241-25592318)
chr4 (66-106)||(1338448-1338488)
chr4 (74-155)||(24976256-24976337)
chr4 (71-135)||(15134589-15134653)
[»] chr3 (17 HSPs)
chr3 (42-137)||(13540169-13540264)
chr3 (42-136)||(35357369-35357465)
chr3 (71-143)||(36480752-36480824)
chr3 (65-138)||(11532485-11532558)
chr3 (82-138)||(14345201-14345257)
chr3 (65-138)||(31205385-31205458)
chr3 (47-156)||(48543414-48543523)
chr3 (74-150)||(29955063-29955139)
chr3 (74-150)||(30004217-30004293)
chr3 (74-138)||(51541295-51541359)
chr3 (40-95)||(3300714-3300769)
chr3 (75-138)||(32881023-32881086)
chr3 (65-111)||(3901570-3901616)
chr3 (82-124)||(35527121-35527163)
chr3 (71-132)||(46492592-46492652)
chr3 (71-111)||(3901521-3901561)
chr3 (71-143)||(48240394-48240465)
[»] chr2 (12 HSPs)
chr2 (65-143)||(42094248-42094325)
chr2 (78-143)||(1469784-1469849)
chr2 (42-143)||(37810191-37810292)
chr2 (42-150)||(4237288-4237396)
chr2 (65-136)||(42251179-42251250)
chr2 (65-138)||(25666848-25666921)
chr2 (74-134)||(41496113-41496173)
chr2 (71-138)||(3466437-3466504)
chr2 (74-156)||(2683408-2683490)
chr2 (65-138)||(18719747-18719820)
chr2 (65-138)||(33069217-33069290)
chr2 (42-139)||(16209366-16209465)
[»] chr1 (10 HSPs)
chr1 (42-136)||(40668922-40669016)
chr1 (65-143)||(38663667-38663745)
chr1 (71-137)||(2542753-2542819)
chr1 (68-133)||(22336911-22336976)
chr1 (66-150)||(18075183-18075265)
chr1 (42-127)||(34437589-34437676)
chr1 (65-140)||(31970168-31970243)
chr1 (74-132)||(40374093-40374150)
chr1 (65-103)||(49822613-49822651)
chr1 (72-136)||(45563089-45563153)
[»] chr7 (19 HSPs)
chr7 (42-143)||(2276322-2276423)
chr7 (65-143)||(12275783-12275861)
chr7 (47-156)||(46074087-46074196)
chr7 (71-135)||(26862966-26863030)
chr7 (66-134)||(40134440-40134508)
chr7 (42-131)||(29356910-29356999)
chr7 (42-138)||(11201284-11201382)
chr7 (72-138)||(47497750-47497816)
chr7 (65-106)||(2276293-2276334)
chr7 (41-106)||(7526108-7526175)
chr7 (65-143)||(10056668-10056746)
chr7 (59-137)||(18089753-18089831)
chr7 (41-83)||(40134380-40134422)
chr7 (65-134)||(49106960-49107028)
chr7 (42-138)||(3235609-3235705)
chr7 (41-134)||(7017140-7017235)
chr7 (41-134)||(7032498-7032593)
chr7 (72-116)||(24516579-24516623)
chr7 (41-97)||(26862905-26862961)
[»] chr6 (6 HSPs)
chr6 (76-150)||(11650916-11650990)
chr6 (72-136)||(6643367-6643431)
chr6 (78-135)||(3150238-3150295)
chr6 (66-135)||(4483383-4483452)
chr6 (72-120)||(1473638-1473686)
chr6 (71-131)||(31989191-31989251)
[»] chr5 (10 HSPs)
chr5 (74-143)||(3907699-3907768)
chr5 (42-138)||(25545268-25545364)
chr5 (65-143)||(4190075-4190153)
chr5 (71-111)||(35244862-35244902)
chr5 (74-138)||(36059257-36059321)
chr5 (74-150)||(38029565-38029641)
chr5 (65-136)||(41169406-41169477)
chr5 (41-88)||(9999777-9999826)
chr5 (65-133)||(3771221-3771289)
chr5 (66-106)||(3907671-3907711)
[»] chr8 (15 HSPs)
chr8 (65-150)||(42072676-42072761)
chr8 (66-118)||(42209431-42209483)
chr8 (42-138)||(26018510-26018610)
chr8 (74-143)||(34504422-34504491)
chr8 (65-138)||(40696204-40696277)
chr8 (66-131)||(20271023-20271090)
chr8 (66-131)||(21057651-21057718)
chr8 (82-138)||(40694663-40694719)
chr8 (78-136)||(40175946-40176004)
chr8 (65-138)||(35586420-35586492)
chr8 (66-137)||(8402529-8402600)
chr8 (66-109)||(30649965-30650008)
chr8 (72-133)||(13260415-13260476)
chr8 (74-138)||(4994180-4994244)
chr8 (42-134)||(38834993-38835085)
[»] scaffold0003 (1 HSPs)
scaffold0003 (65-137)||(136372-136444)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 53127929 - 53128136
Alignment:
Q  16 acatcaaatccaaatggcgtgaactaaatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtg 115  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||    
T  53127929 acatcaaatccaaatggcatgaacgaaatgctagcaacactcattttaacacgcactatttgattggttaaaactcacatgggtcccaccatatcaagtg 53128028  T
Q  116 ggtcctatataaatttggtgggttccatataaattgtaatctttacatggaaaagcctacttcggtctatctcaatctatttcttatccacgccccgaac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  53128029 ggtcctatataaatttggtgggttccatataaattgtaatctttacatggaaaagcctacttcggtctatctcaatctatttcttatccacgccccaaac 53128128  T
Q  216 caccaaac 223  Q
    ||||||||    
T  53128129 caccaaac 53128136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 33414019 - 33414110
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaattgtaatc 156  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||| |||||    
T  33414019 cacactctctttgattggttaaaattcacatggatcccaccaaatcacgtgggtcctatataaatttggtgggtcccatatgaattttaatc 33414110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 16457911 - 16458009
Alignment:
Q  42 aatgctagcaacactcatttt--agcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    |||||||||||||| ||||||  | ||||| |||||||||||||||||| |||||||||||||| || |||| |||||||| |||||||||||||||||    
T  16457911 aatgctagcaacacacattttctaacacactctctttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttggtgggt 16458009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 21433996 - 21433923
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||| ||| |||||||||||||| ||||||||||||||||| |||| |||||||  |||||||||||||||||    
T  21433996 cacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtctcatataaatttggtgggt 21433923  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 2324780 - 2324864
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaattgtaat 155  Q
    |||||||||||||||||| |||||||  |  ||||| |||| |||||||| ||||||||||||||||| |||| |||||| ||||    
T  2324780 ctctttgattggttaaaattcacatgagtttcaccaaatcatgtgggtcccatataaatttggtgggtcccatgtaaattttaat 2324864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 45654125 - 45654049
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaatt 150  Q
    ||||||||||||||| |||||||||||||| || |||| |||||||| ||||||||||| | |||  ||||||||||    
T  45654125 tttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttgataggtctcatataaatt 45654049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 993210 - 993288
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcc 120  Q
    |||||||||||||| ||| ||   ||||||||||||||||||||||| |||||||  |||||||| |||| ||||||||    
T  993210 aatgctagcaacacacatctttcaacacactctttgattggttaaaattcacatgagtcccaccaaatcatgtgggtcc 993288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 2247696 - 2247635
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttg 132  Q
    |||||||||||||||||| | ||||||||||||||| |||| |||||||  |||||||||||    
T  2247696 ctctttgattggttaaaattaacatggatcccaccaaatcatgtgggtcgcatataaatttg 2247635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 19382290 - 19382393
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttcc 141  Q
    |||||||||||||| | ||  | ||||| || ||||||||||||||| ||||||||||||||||| |||| ||||||     |||||||||| |||  ||    
T  19382290 aatgctagcaacacactttccaacacactctatttgattggttaaaattcacatggatcccaccaaatcatgtgggt-----ataaatttggcgggaccc 19382384  T
Q  142 atataaatt 150  Q
    |||||||||    
T  19382385 atataaatt 19382393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 17181333 - 17181264
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    ||||||| ||||||| |||||| | |||||||| |||| |||||||  ||||||||||||||||| ||||    
T  17181333 tttgattagttaaaattcacataggtcccaccaaatcacgtgggtctcatataaatttggtgggtcccat 17181264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 25592318 - 25592241
Alignment:
Q  66 acacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    |||| |||||| ||||||||||| |||  | | |||||||| |||| ||||||||||||||||||| |||||| ||||    
T  25592318 acactctctttcattggttaaaattcattttggtcccaccaaatcatgtgggtcctatataaattttgtgggtcccat 25592241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 1338448 - 1338488
Alignment:
Q  66 acacactctttgattggttaaaactcacatggatcccacca 106  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  1338448 acactctctttgattggttaaaaatcacatggatcccacca 1338488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 24976256 - 24976337
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaattgtaat 155  Q
    |||||||| | |||| |||||| ||||  | || |||| |||||||| |||| |||||||||||| ||||||||||| ||||    
T  24976256 tttgattgttaaaaattcacatagatctaaacaaatcatgtgggtcccatatgaatttggtgggtaccatataaattttaat 24976337  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 15134589 - 15134653
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtg 135  Q
    |||||| ||||||||||| |||||||| ||| || | ||||  ||||||| ||||||||||||||    
T  15134589 ctcttttattggttaaaattcacatgggtccgactaaatcatttgggtcccatataaatttggtg 15134653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 13540169 - 13540264
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtggg 137  Q
    |||| ||||||||| ||||||| ||||| |||||||||||||| ||||| |||||| |||||||| |||| ||| | |||||||||||||||||||    
T  13540169 aatgttagcaacacacattttaacacactctctttgattggtttaaactaacatggctcccaccaaatcatgtgagacctatataaatttggtggg 13540264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 35357465 - 35357369
Alignment:
Q  42 aatgctagcaacactcattttagcacacactct--ttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgg 136  Q
    ||||||||||||||||||| || ||||||||||  |||||||||||||| |||||||| ||| |||| |||| ||  |||| |||||||||||||||    
T  35357465 aatgctagcaacactcattctaacacacactctctttgattggttaaaattcacatgggtcctaccaaatcatgtaagtcccatataaatttggtgg 35357369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 36480824 - 36480752
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    |||||||||||| ||||| |||||||| |||||||| |||| |||||||| ||||||||||| ||||| ||||    
T  36480824 ctctttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttgttgggtcccat 36480752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 11532558 - 11532485
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||| |||||||||||||||||| |||||||| | |||||| |||| |||| ||| |||||||||| ||||||    
T  11532558 cacactctctttgattggttaaaattcacatgggttccaccaaatcatgtggatcccatataaatttagtgggt 11532485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 14345257 - 14345201
Alignment:
Q  82 gttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||||| ||||||| ||||||||| |||| |||||||| |||||||||||||||||    
T  14345257 gttaaaattcacatgaatcccaccaaatcatgtgggtcccatataaatttggtgggt 14345201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 31205385 - 31205458
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||| |||||||||||||||||| | |||||| ||  |||| |||| |||||||| ||||||| |||||||||    
T  31205385 cacactctctttgattggttaaaatttacatgggtcttaccaaatcatgtgggtcccatataaaattggtgggt 31205458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 48543523 - 48543414
Alignment:
Q  47 tagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatata 146  Q
    ||||||||| |||||||  |||| |||||| ||||||||||| |||||||  || || || |||| |||| ||| ||||||||||  ||||| |||| ||    
T  48543523 tagcaacacacattttaatacactctctttaattggttaaaattcacatgagtctcatcaaatcacgtggatcccatataaatttaatgggtcccatgta 48543424  T
Q  147 aattgtaatc 156  Q
    |||| |||||    
T  48543423 aattttaatc 48543414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 29955063 - 29955139
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaatt 150  Q
    ||||||||||||||| |||||||| ||||| || |||| |||||||| | ||||||||| ||| | |||||| ||||    
T  29955063 tttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatggatcccatatgaatt 29955139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 30004217 - 30004293
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaatt 150  Q
    ||||||||||||||| |||||||| ||||| || |||| |||||||| | ||||||||| ||| | |||||| ||||    
T  30004217 tttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatggatcccatatgaatt 30004293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 51541359 - 51541295
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||||||||||||| ||| |||  |||||||| |||| ||||||||||||||  ||||||||||    
T  51541359 tttgattggttaaaattcagatgagtcccaccaaatcatgtgggtcctatatacttttggtgggt 51541295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 3300714 - 3300769
Alignment:
Q  40 taaatgctagcaacactcattttagcacacactctttgattggttaaaactcacat 95  Q
    |||||||||||||||| ||||||| ||||  ||||||||| |||||||| ||||||    
T  3300714 taaatgctagcaacacacattttaacacattctctttgatcggttaaaattcacat 3300769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 32881023 - 32881086
Alignment:
Q  75 ttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    |||||||||||| | |||||||| |||||| | |||| |||| ||| |||||||||||||||||    
T  32881023 ttgattggttaatattcacatgggtcccacaaaatcatgtggatcccatataaatttggtgggt 32881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 3901616 - 3901570
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatca 111  Q
    ||||| |||||||||||||||||| |||||||| |||||||| ||||    
T  3901616 cacactctctttgattggttaaaattcacatgggtcccaccaaatca 3901570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 35527163 - 35527121
Alignment:
Q  82 gttaaaactcacatggatcccaccatatcaagtgggtcctata 124  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||    
T  35527163 gttaaaattcacatggatcccaccaaatcatgtgggtcctata 35527121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 46492592 - 46492652
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttg 132  Q
    ||||||||||| |||||| |||||| |||||||||| || | ||||| ||||||||||||||    
T  46492592 ctctttgattgattaaaattcacatagatcccaccaaattatgtggg-cctatataaatttg 46492652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 3901521 - 3901561
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatca 111  Q
    |||||||||||||||||| |||||||| |||||||| ||||    
T  3901521 ctctttgattggttaaaattcacatgggtcccaccaaatca 3901561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 48240465 - 48240394
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    ||||||||||  |||||| | |||||||||| |||| |||| |||||| | ||||||||||| ||||||||||    
T  48240465 ctctttgattacttaaaatttacatggatcc-accaaatcatgtgggttccatataaatttgatgggttccat 48240394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 42094325 - 42094248
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    |||||||||||||||||||||||| |||||||| |||||||| |||| |||||||| ||||||||||||||||| ||||    
T  42094325 cacacactctttgattggttaaaattcacatgg-tcccaccaaatcatgtgggtcccatataaatttggtgggtcccat 42094248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 1469849 - 1469784
Alignment:
Q  78 attggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    ||||||||||| ||||||||||||||| | |||| |||||||| ||||||||||||||| ||||||    
T  1469849 attggttaaaattcacatggatcccacaaaatcatgtgggtcccatataaatttggtggattccat 1469784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 37810292 - 37810191
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttcc 141  Q
    |||||||||||||| | ||  | ||||| | |||||||||||||||| |||||||| |||||||| || |  ||||||| ||||||||||||||||| ||    
T  37810292 aatgctagcaacacactttccatcacactcactttgattggttaaaattcacatgggtcccaccaaattagatgggtcccatataaatttggtgggtccc 37810193  T
Q  142 at 143  Q
    ||    
T  37810192 at 37810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 4237396 - 4237288
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttcc 141  Q
    |||| ||||||||  ||||||| |||||  | ||||||| ||||||| |||||||| | |||||| |||| |||||||| ||| ||||||||||| | ||    
T  4237396 aatgttagcaacatacattttaacacactttttttgattagttaaaattcacatgggtaccaccaaatcatgtgggtcccatacaaatttggtggatccc 4237297  T
Q  142 atataaatt 150  Q
    || ||||||    
T  4237296 atgtaaatt 4237288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 42251179 - 42251250
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgg 136  Q
    ||||| ||||||||| |||||||| || ||||| |||||||| || | ||||| ||||||||||||||||||    
T  42251179 cacactctctttgatcggttaaaattcgcatgggtcccaccaaattatgtgggacctatataaatttggtgg 42251250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 25666921 - 25666848
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||| |||||||||  |||||||  |||||||||||||||| |||| || ||| | |||||||||||||||||    
T  25666921 cacactctctttgatgtgttaaaatccacatggatcccaccaaatcatgtaggttccatataaatttggtgggt 25666848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 41496173 - 41496113
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggt 134  Q
    |||||||| |||||| |||||||| || ||| | ||||||||||| |||||||||||||||    
T  41496173 tttgattgattaaaattcacatgggtcacactaaatcaagtgggttctatataaatttggt 41496113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 3466504 - 3466437
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    |||||||||||||||||| |||||||| | |||| | |||  |||||||| |||| ||||||||||||    
T  3466504 ctctttgattggttaaaattcacatgggttccactaaatcgtgtgggtcccatatgaatttggtgggt 3466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 2683490 - 2683408
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaattgtaatc 156  Q
    ||||||||||||||| | | |||| | |||||| |||| ||||||||  |||||||| ||||||| |||||| |||| |||||    
T  2683490 tttgattggttaaaatttatatgggttccaccaaatcatgtgggtccagtataaattcggtgggtcccatatgaattttaatc 2683408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 18719747 - 18719820
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||| || ||||||||||||||| ||||| |  | |||||| |||| |||||||| ||||||||||| |||||    
T  18719747 cacactctttttgattggttaaaattcacacgagttccaccaaatcatgtgggtcccatataaatttgatgggt 18719820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 33069290 - 33069217
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||| || ||||||||||||||| |||| ||| |||||| | || | |||||||| ||||||| |||||||||    
T  33069290 cacactctttttgattggttaaaaatcacttgggtcccactaaattatgtgggtcccatataaacttggtgggt 33069217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 16209366 - 16209465
Alignment:
Q  42 aatgctagcaacactcatttt--agcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggtt 139  Q
    |||||||||||||| || |||  | ||||| |||||| ||||||||||| |||||||  | |||||| ||   || ||||| ||||||||||||||||||    
T  16209366 aatgctagcaacacacactttccaacacactctctttaattggttaaaattcacatgagttccaccaaattttgtcggtcccatataaatttggtgggtt 16209465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 40668922 - 40669016
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgg 136  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| || ||| | || | ||||| || |||||||||||||||    
T  40668922 aatgctagcaacacacattttaacacactctctttgattggttaaaactcacatgggtctcacaaaattatgtgggacccatataaatttggtgg 40669016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 38663667 - 38663745
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    ||||| ||||||||||||||| || |||||| | |||||||| ||||  ||||||||||||||||||||||||| ||||    
T  38663667 cacactctctttgattggttacaattcacataggtcccaccaaatcatatgggtcctatataaatttggtgggtcccat 38663745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 2542819 - 2542753
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtggg 137  Q
    |||||||||||||||||| |||||||| | |||||| |||| |||||| | ||||||||||||||||    
T  2542819 ctctttgattggttaaaattcacatggcttccaccaaatcatgtgggttccatataaatttggtggg 2542753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 22336911 - 22336976
Alignment:
Q  68 acactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttgg 133  Q
    ||||||||||||||||||||| ||||||||||| || || ||||| ||| ||| ||||||||||||    
T  22336911 acactctttgattggttaaaattcacatggatctcatcaaatcaattggatcccatataaatttgg 22336976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 18075183 - 18075265
Alignment:
Q  66 acacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaatt 150  Q
    ||||||||||| |||||||||||||||| ||| |  ||||| |||| |||||||| |||||||||||||||| ||||||| ||||    
T  18075183 acacactcttttattggttaaaactcac-tgg-taacaccaaatcatgtgggtcccatataaatttggtgggatccatatgaatt 18075265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 34437589 - 34437676
Alignment:
Q  42 aatgctagcaacactcatttt--agcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataa 127  Q
    |||||||||||||| ||||||  | || || |||||||||||||||||| |||||||| |||||||| |||| ||||| || ||||||    
T  34437589 aatgctagcaacacacatttttcaacaaactctctttgattggttaaaattcacatgggtcccaccaaatcatgtgggacccatataa 34437676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 31970243 - 31970168
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttc 140  Q
    ||||| || ||| |||| |||||  ||| |||| |||||||| |||| |||||||| |||||||||||||||||||    
T  31970243 cacactctttttaattgattaaatttcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggttc 31970168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 40374150 - 40374093
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttg 132  Q
    ||||||||||||||| ||||||||  ||||||| |||| |||||||| |||||||||||    
T  40374150 tttgattggttaaaattcacatggc-cccaccaaatcatgtgggtcccatataaatttg 40374093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 49822651 - 49822613
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatccca 103  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  49822651 cacactctctttgattggttaaaattcacatggatccca 49822613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 45563089 - 45563153
Alignment:
Q  72 tctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgg 136  Q
    |||||||||||||||||  ||||||| |||||||| |||| || | ||  |||||||||||||||    
T  45563089 tctttgattggttaaaatgcacatggctcccaccaaatcatgttgatctcatataaatttggtgg 45563153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 2276423 - 2276322
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttcc 141  Q
    |||||||||||||| ||||||| |||||  ||||| ||||||||||| ||||||| ||||||||| || | ||||||||  ||||||||||||||| |||    
T  2276423 aatgctagcaacacacattttaacacactatctttaattggttaaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtgggatcc 2276324  T
Q  142 at 143  Q
    ||    
T  2276323 at 2276322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 12275861 - 12275783
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    ||||| ||||| |||||||||||| ||| |||| |||||||| |||| |||||||| ||||||||||||||||| ||||    
T  12275861 cacactctcttcgattggttaaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccat 12275783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 46074196 - 46074087
Alignment:
Q  47 tagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatata 146  Q
    ||||||||| ||||||| ||||| |||||| ||||||||||| |||||||  ||||| || |||| |||| ||| ||||||||||  ||||| |||| ||    
T  46074196 tagcaacacacattttaacacactctctttaattggttaaaattcacatgagtcccatcaaatcacgtggatcccatataaatttaatgggtcccatgta 46074097  T
Q  147 aattgtaatc 156  Q
    |||| |||||    
T  46074096 aattttaatc 46074087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 26863030 - 26862966
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtg 135  Q
    |||||| ||||||||||| |||||||| |||||||| |||| ||||||||||||||||| |||||    
T  26863030 ctctttaattggttaaaattcacatgggtcccaccaaatcatgtgggtcctatataaatatggtg 26862966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 40134508 - 40134440
Alignment:
Q  66 acacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggt 134  Q
    ||||||||| ||||||||||||| |||||||| |||||||| || | |||||||| |||||||||||||    
T  40134508 acacactctctgattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggt 40134440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 29356910 - 29356999
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaattt 131  Q
    ||||||||| |||||||||||  ||||| |||||||||||||||||| |||||||| | ||||||  ||| |||| ||| |||| |||||    
T  29356910 aatgctagcgacactcatttttacacactctctttgattggttaaaattcacatgggttccaccaattcacgtggatcccatatgaattt 29356999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 11201284 - 11201382
Alignment:
Q  42 aatgctagcaacactcatttt--agcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    |||||||||||||| || |||  | ||||| |||||| ||| ||||||| |||||||| |||||||| |||| |||||||  ||||||||||| |||||    
T  11201284 aatgctagcaacacacactttccaacacactctctttcattagttaaaattcacatgggtcccaccaaatcacgtgggtctcatataaatttgatgggt 11201382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 47497816 - 47497750
Alignment:
Q  72 tctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||||||||||||||| |||||||  |||||||| || | |||||||| ||| |||||||||||||    
T  47497816 tctttgattggttaaaattcacatgagtcccaccaaattatgtgggtcccatacaaatttggtgggt 47497750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 2276293 - 2276334
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccacca 106  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  2276293 cacactctctttgattggttaaaattcacatggatcccacca 2276334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 7526108 - 7526175
Alignment:
Q  41 aaatgctagcaacactcattttagcacacactc--tttgattggttaaaactcacatggatcccacca 106  Q
    ||||||||| ||||| |||| || |||||||||  ||||||| ||||||| |||||||||||||||||    
T  7526108 aaatgctagtaacacacattctaacacacactcactttgatttgttaaaattcacatggatcccacca 7526175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 10056746 - 10056668
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    ||||| |||||| ||| |||||||  || |||| |||| ||| |||| |||||||| ||||||| ||||||||||||||    
T  10056746 cacactctctttaattagttaaaatccatatgggtccctccaaatcatgtgggtcccatataaaattggtgggttccat 10056668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 18089831 - 18089753
Alignment:
Q  59 ttttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtggg 137  Q
    ||||| ||||| ||||||| |||||||||| |||||||| ||| |||| || | ||||  || ||||||||||||||||    
T  18089831 ttttaacacactctctttggttggttaaaattcacatgggtccaaccaaattatgtggaacccatataaatttggtggg 18089753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 40134380 - 40134422
Alignment:
Q  41 aaatgctagcaacactcattttagcacacactctttgattggt 83  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||    
T  40134380 aaatgctagcaacacacattttaacacactctctttgattggt 40134422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 49107028 - 49106960
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggt 134  Q
    ||||| |||||||||||||||||| |||||| | |||||||| |||| | ||| || |||||||||||||    
T  49107028 cacactctctttgattggttaaaattcacataggtcccaccaaatcatgcgggacc-atataaatttggt 49106960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 3235705 - 3235609
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    |||||||||||||| ||||  | ||||| || ||||||||||||||| |||||||| ||| |||  |  | |||||||| || |||||||| |||||    
T  3235705 aatgctagcaacacacattccaacacactctttttgattggttaaaattcacatgggtccgacccaaatatgtgggtcccatgtaaatttgatgggt 3235609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 7017235 - 7017140
Alignment:
Q  41 aaatgctagcaacactcatttt--agcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggt 134  Q
    ||||||||||||||| ||||||  |  |||| |||||||||||||||||| ||||||   ||| |||| || | |||| ||| |||||||||||||    
T  7017235 aaatgctagcaacacacatttttcaatacactctctttgattggttaaaattcacataagtcctaccaaattatgtggatcccatataaatttggt 7017140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 7032593 - 7032498
Alignment:
Q  41 aaatgctagcaacactcatttt--agcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggt 134  Q
    ||||||||||||||| ||||||  |  |||| |||||||||||||||||| ||||||   ||| |||| || | |||| ||| |||||||||||||    
T  7032593 aaatgctagcaacacacatttttcaatacactctctttgattggttaaaattcacataagtcctaccaaattatgtggatcccatataaatttggt 7032498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 24516579 - 24516623
Alignment:
Q  72 tctttgattggttaaaactcacatggatcccaccatatcaagtgg 116  Q
    ||||||||||||||||| |||||||| |||||||| |||| ||||    
T  24516579 tctttgattggttaaaattcacatgggtcccaccaaatcatgtgg 24516623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 26862905 - 26862961
Alignment:
Q  41 aaatgctagcaacactcattttagcacacactctttgattggttaaaactcacatgg 97  Q
    ||||| || |||||| ||||||| ||||| ||| |||||||||||||| ||||||||    
T  26862905 aaatgttatcaacacacattttaacacactctccttgattggttaaaattcacatgg 26862961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 11650916 - 11650990
Alignment:
Q  76 tgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaatt 150  Q
    ||||||||||||| ||||||||||||||||| || | |||||||| ||||||||||||||||| |||| ||||||    
T  11650916 tgattggttaaaattcacatggatcccaccaaattatgtgggtcccatataaatttggtgggtcccatgtaaatt 11650990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 6643431 - 6643367
Alignment:
Q  72 tctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgg 136  Q
    ||||||||||||||||| ||| || | |||||||| |||| |||||||| |||||||||||||||    
T  6643431 tctttgattggttaaaattcatataggtcccaccaaatcatgtgggtcccatataaatttggtgg 6643367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 3150238 - 3150295
Alignment:
Q  78 attggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtg 135  Q
    ||||||||||| |||||||| |||||||| |||| |||| | | ||||||||||||||    
T  3150238 attggttaaaattcacatgggtcccaccaaatcatgtggattccatataaatttggtg 3150295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 4483383 - 4483452
Alignment:
Q  66 acacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtg 135  Q
    |||| |||||||||||||||||| | | | || |||||||| |||| ||||| || ||||||||||||||    
T  4483383 acactctctttgattggttaaaattaatacgggtcccaccaaatcatgtgggacccatataaatttggtg 4483452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 1473638 - 1473686
Alignment:
Q  72 tctttgattggttaaaactcacatggatcccaccatatcaagtgggtcc 120  Q
    ||||||||||||||||| |||||||| | |||||| |||| ||||||||    
T  1473638 tctttgattggttaaaattcacatgggttccaccaaatcatgtgggtcc 1473686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 31989251 - 31989191
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaattt 131  Q
    |||||||||| |||||||   |||||||||||| || |||| |||||||| ||||||||||    
T  31989251 ctctttgatttgttaaaatatacatggatcccaacaaatcatgtgggtccaatataaattt 31989191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 3907768 - 3907699
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    ||||||||||||||| |||||||| |||||||| |||| |||||||| ||||||||||||||||| ||||    
T  3907768 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccat 3907699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 25545364 - 25545268
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||||| |||||| ||||||| ||||| |||||||||||||||||| |||| ||  |||||||| |||| || ||||| |||||||||| ||||||    
T  25545364 aatgctatcaacacacattttaacacactctctttgattggttaaaattcacgtgagtcccaccaaatcatgtcggtcccatataaatttagtgggt 25545268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 4190075 - 4190153
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    ||||| |||||||||||||||||| |||||||||||||| || || | ||||||||||| | |||||||||||| ||||    
T  4190075 cacactctctttgattggttaaaattcacatggatcccaacaaattacgtgggtcctatgtgaatttggtgggtcccat 4190153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 35244862 - 35244902
Alignment:
Q  71 ctctttgattggttaaaactcacatggatcccaccatatca 111  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  35244862 ctctttgattggttaaaattcacatggatcccaccatatca 35244902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 36059321 - 36059257
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||||||||||||| | |||||||||||| || |||| |||||||  ||||||||||| |||||    
T  36059321 tttgattggttaaaatttacatggatcccatcaaatcatgtgggtctcatataaatttgatgggt 36059257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 38029565 - 38029641
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaatt 150  Q
    ||||||||||||||| |||||||| || ||||| |||| |||| ||  ||||||||| |||||||| ||||| ||||    
T  38029565 tttgattggttaaaattcacatgggtctcaccaaatcatgtggatctcatataaattgggtgggtttcatatgaatt 38029641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 41169406 - 41169477
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgg 136  Q
    ||||| || ||||||||||| ||| |||||||||| |||||| |||| | | |||| |||||||||||||||    
T  41169406 cacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 41169477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 9999826 - 9999777
Alignment:
Q  41 aaatgctagcaacactcattttagcacacac--tctttgattggttaaaa 88  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||    
T  9999826 aaatgctagcaacacacattttaacacacactgtctttgattggttaaaa 9999777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 3771289 - 3771221
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttgg 133  Q
    |||| ||||||||||||||||||| |||||| | | |||||| |||| | ||| || ||||||||||||    
T  3771289 cacatactctttgattggttaaaattcacattggttccaccaaatcatgcgggacccatataaatttgg 3771221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 3907671 - 3907711
Alignment:
Q  66 acacactctttgattggttaaaactcacatggatcccacca 106  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  3907671 acacactctttgattggttaaaattcacatgggacccacca 3907711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 42072676 - 42072761
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccatataaatt 150  Q
    ||||| |||||||||||||||| | |||||||| |||||||| ||||  ||||||  ||||||||||||||||| |||| ||||||    
T  42072676 cacactctctttgattggttaacattcacatgggtcccaccaaatcatatgggtctcatataaatttggtgggtcccatgtaaatt 42072761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 42209483 - 42209431
Alignment:
Q  66 acacactctttgattggttaaaactcacatggatcccaccatatcaagtgggt 118  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||    
T  42209483 acacactctttgattggttaaaattcacatggttcccaccatatcatgtgggt 42209431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 26018610 - 26018510
Alignment:
Q  42 aatgctagcaacactcatttt--agcacacactct--ttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtggg 137  Q
    ||||||| |||||| ||||||  | ||||||||||  |||||||||||||| |||||||| ||||| || || | |||||||| ||||||||||||||||    
T  26018610 aatgctaacaacacacattttccaacacacactctccttgattggttaaaattcacatgggtcccatcaaattatgtgggtcccatataaatttggtggg 26018511  T
Q  138 t 138  Q
    |    
T  26018510 t 26018510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 34504491 - 34504422
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggttccat 143  Q
    ||||||||||||||| || ||||| || ||||| |||| |||||||| |||||||||||||| |||||||    
T  34504491 tttgattggttaaaattcgcatgggtcacaccaaatcatgtgggtcccatataaatttggtgagttccat 34504422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 40696204 - 40696277
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||| || ||||||| ||||||| |||||||| |||||||| |||| |||||| ||||||| |||||||||||    
T  40696204 cacactctttttgattagttaaaattcacatgggtcccaccaaatcatgtgggttctatatagatttggtgggt 40696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 20271023 - 20271090
Alignment:
Q  66 acacactctttgattggttaaaac--tcacatggatcccaccatatcaagtgggtcctatataaattt 131  Q
    |||| ||||||||||||||||||   ||||||||||||||||| |||| |||||||| ||||||||||    
T  20271023 acactctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattt 20271090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 21057651 - 21057718
Alignment:
Q  66 acacactctttgattggttaaaac--tcacatggatcccaccatatcaagtgggtcctatataaattt 131  Q
    |||| ||||||||||||||||||   ||||||||||||||||| |||| |||||||| ||||||||||    
T  21057651 acactctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattt 21057718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 40694719 - 40694663
Alignment:
Q  82 gttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||||| |||||||| |||||||| |||| |||||||||||||| |||||||||||    
T  40694719 gttaaaattcacatgggtcccaccaaatcatgtgggtcctatatagatttggtgggt 40694663  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 40176004 - 40175946
Alignment:
Q  78 attggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgg 136  Q
    ||||||||||| |||||||| |||||||| || | |||||||| |||||||||||||||    
T  40176004 attggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtgg 40175946  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 35586420 - 35586492
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||| |||||||||||||||||| ||||| || |||||||| |||| ||| |||  |||||||||||||||||    
T  35586420 cacactctctttgattggttaaaattcacacgg-tcccaccaaatcatgtgagtctcatataaatttggtgggt 35586492  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 8402600 - 8402529
Alignment:
Q  66 acacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtggg 137  Q
    ||||||| |||||||||||||||||| |||||  ||||||| |||| ||||| || |||| |||||| ||||    
T  8402600 acacactatttgattggttaaaactctcatgggccccaccaaatcatgtgggacccatattaatttgttggg 8402529  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 30649965 - 30650008
Alignment:
Q  66 acacactctttgattggttaaaactcacatggatcccaccatat 109  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||    
T  30649965 acacattctttgatttgttaaaattcacatggatcccaccatat 30650008  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 13260415 - 13260476
Alignment:
Q  72 tctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttgg 133  Q
    ||||| |||||||||||  ||||||| ||||||||  ||| |||||||| ||||||||||||    
T  13260415 tcttttattggttaaaatgcacatgggtcccaccaactcatgtgggtcccatataaatttgg 13260476  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 4994180 - 4994244
Alignment:
Q  74 tttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtgggt 138  Q
    ||||||||||||||| ||  |||  |||||||| |||| |||||||| |||||||||| ||||||    
T  4994180 tttgattggttaaaattcttatgagtcccaccaaatcatgtgggtcccatataaattttgtgggt 4994244  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 38834993 - 38835085
Alignment:
Q  42 aatgctagcaacactcattttagcacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggt 134  Q
    ||||||| | |||| ||||| | ||||  |||||||||||  ||||| |||||||| || ||||| |||| | |||||| |||||||||||||    
T  38834993 aatgctaaccacacacatttcaacacattctctttgattgactaaaattcacatgggtctcaccaaatcatgcgggtcccatataaatttggt 38835085  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 136444 - 136372
Alignment:
Q  65 cacacactctttgattggttaaaactcacatggatcccaccatatcaagtgggtcctatataaatttggtggg 137  Q
    ||||| || |||||||||||||||||||||||  ||||| || |||| ||| | || ||||||||||| ||||    
T  136444 cacactctttttgattggttaaaactcacatgtgtcccatcaaatcatgtgtgacccatataaatttgatggg 136372  T

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