View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7224_low_5 (Length: 515)
Name: NF7224_low_5
Description: NF7224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7224_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 51849183 - 51849676
Alignment:
| Q |
18 |
gtggtgagttgcgaaaatttcgaaccgttcatcttgggtgatggttgagtttgttttcttaaacattcatgtgtagtcattgattttatttcaatgatag |
117 |
Q |
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| T |
51849183 |
gtggtgagttgcgaaaatttcgaaccgttcatcttgggtgatggttgagtttgttttcttaaacattcatgtgtagtcattgattttatttcaatgatag |
51849282 |
T |
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| Q |
118 |
gatttgactcaaatt-gcatgagatagctagaatttagaagaggactattgtagctcatgttatgttgggtcaggtagaaaatggtatcagtcgttttgc |
216 |
Q |
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| T |
51849283 |
gatttgactcaaatttgcatgagatagctagaatttagaagaggactattgtagctcatgttatgttgggtcaggtagaaaatggtatcagtcgtttcgc |
51849382 |
T |
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| Q |
217 |
aatattccatattgtaatgtactagtactactaatgaatattttatcttgtaattcatgttatgagctgcagtaggcaacacctagcctctctaatctaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
51849383 |
aatattccatattgtaatgtactagtactactaatgaatattttatcttgtaattcatgttatgggctgcagtaggcaacacccagcctctctaatctaa |
51849482 |
T |
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| Q |
317 |
ctgaggaaaaaatattccgagaaaaagaataactgttaatatgagagaaaatttctcatagnnnnnnnnnnnnnnnnnnnnaatatgaaacatgcgactc |
416 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51849483 |
ctgaggaaaaaatattccgagaaaaagaataaatgttaatatgagagaaaatttctcatagtttttcttttttgtctttttaatatgaaacatgcgactc |
51849582 |
T |
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| Q |
417 |
agactatttttcaagagttgtcaatgatgtttgtcagttattttgggttgcttttttcagttatgagtttccaatgcatgaatttcatttcagt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51849583 |
agactatttttcaagagttgtcaatgatgtttgtcagttattttgggttgcttttttcagttatgagtttccaatgcatgaatttcatttcagt |
51849676 |
T |
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