View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7224_low_6 (Length: 511)

Name: NF7224_low_6
Description: NF7224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7224_low_6
NF7224_low_6
[»] chr3 (10 HSPs)
chr3 (1-503)||(19840454-19840954)
chr3 (218-394)||(19958606-19958782)
chr3 (224-394)||(20034057-20034224)
chr3 (224-394)||(20031886-20032055)
chr3 (51-181)||(20030963-20031098)
chr3 (222-298)||(19836456-19836532)
chr3 (54-133)||(19851300-19851372)
chr3 (54-117)||(19958800-19958864)
chr3 (397-457)||(54800395-54800455)
chr3 (185-220)||(20031118-20031153)
[»] chr8 (1 HSPs)
chr8 (401-457)||(23565721-23565777)
[»] chr5 (1 HSPs)
chr5 (401-457)||(26243828-26243884)
[»] chr4 (1 HSPs)
chr4 (407-457)||(43420490-43420540)
[»] chr7 (2 HSPs)
chr7 (401-457)||(4287260-4287316)
chr7 (401-457)||(31309112-31309168)
[»] chr1 (2 HSPs)
chr1 (50-79)||(1391599-1391628)
chr1 (409-457)||(10613575-10613623)


Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 19840954 - 19840454
Alignment:
Q  1 gtctaataccaatttatgctgatggccttttgaaatgtttggatttactttagttagtagttgttgcttctgttgcaagttatcgaggcagataacaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19840954 gtctaataccaatttatgctgatggccttttgaaatgtttggatttactttagttagtagttgttgcttctgttgcaagttatcgaggcagataacaact 19840855  T
Q  101 agctagctcttgaagttggttagctgaaattgtaatttgttagtatcaaatcaattagaagttggctggagttaattagaagataatgcacaacttgtac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19840854 agctagctcttgaagttggttagctgaaattgtaatttgttagtatcaaatcaattagaagttggctggagttaattagaagataatgcacaacttgtac 19840755  T
Q  201 tgtatacaaatgtattgtgtctcattatgagttgaattgaataaggtaatcatctagttttctctcagtttccttctctttttctgttcttcatctaaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19840754 tgtatacaaatgtattgtgtctcattatgagttgaattgaataagggaatcatctagttttctctcattttccttctctttttctgttcttcatctaaat 19840655  T
Q  301 tcaattcctttgctaactatgattatgttaaggtattattgaagataccgaactgtatcaggagaatgattcatattatgcagaatttatgaaaataagt 400  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19840654 tcaattcctttgctaac--tgattatgttaaggtattattgaagataccgaactgtatcaggagaatggttcatattatgcagaatttatgaaaataagt 19840557  T
Q  401 ataggagcagaagaaaccagtattcattttcaaacataatctaaagggacaaccaaacaatcaaagtggagattcaaaaggtttttcattatatgtctct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19840556 ataggagcagaagaaaccagtattcattttcaaacataatctaaagggacaaccaaacaatcaaagtggagattcaaaaggtttttcattatatgtctct 19840457  T
Q  501 gct 503  Q
    |||    
T  19840456 gct 19840454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 218 - 394
Target Start/End: Complemental strand, 19958782 - 19958606
Alignment:
Q  218 tgtctcattatgagttgaattgaataaggtaatcatctagttttctctcagtttccttctctttttctgttcttcatctaaattcaattcctttgctaac 317  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19958782 tgtctcattatgagttgaattgaataagagaatcatctacttttctcttagtttccttctctttttctgttcttcatctaaattcaattcctttgctaac 19958683  T
Q  318 tatgattatgttaaggtattattgaagataccgaactgtatcaggagaa-tgattcatattatgcagaatttatgaaa 394  Q
    || |||||||||||||||||||| ||||||| ||| ||||| |||| || ||||| | ||||||||||||||||||||    
T  19958682 taagattatgttaaggtattattaaagatactgaattgtattaggacaattgatt-agattatgcagaatttatgaaa 19958606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 224 - 394
Target Start/End: Original strand, 20034057 - 20034224
Alignment:
Q  224 attatgagttgaattgaataaggtaatcatctagttttctctcagtttccttctctttttctgttcttcatctaaattcaattcctttgctaactatgat 323  Q
    ||||| |||||||||||||||| ||||||| ||| ||||||||| ||||||||||||| ||||||| |||   |||||||||||||||| |||||| |||    
T  20034057 attatcagttgaattgaataagataatcatataggtttctctcattttccttctctttctctgttcatca---aaattcaattcctttgttaactaagat 20034153  T
Q  324 tatgttaaggtattattgaagataccgaactgtatcaggagaatgattcatattatgcagaatttatgaaa 394  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||    
T  20034154 tatgttaaggtattattaaagatactgaactgtattaggagaatgattcatatcatgcagaatttatgaaa 20034224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 224 - 394
Target Start/End: Original strand, 20031886 - 20032055
Alignment:
Q  224 attatgagttgaattgaataaggtaatcatctagttttctctcagtttccttctctttttctgttcttcatctaaattcaattcctttgctaactatgat 323  Q
    ||||| ||||| ||||||||||  |||||| |||||||| || |  ||||||| ||||| ||||||||||||  |||||||||||||||||| |||||||    
T  20031886 attatcagttggattgaataagagaatcatttagttttcccttatcttccttccctttt-ctgttcttcatcataattcaattcctttgctagctatgat 20031984  T
Q  324 tatgttaaggtattattgaagataccgaactgtatcaggagaatgattcatattatgcagaatttatgaaa 394  Q
    ||| |||||||||||||| |||||| ||| ||||| |||| | ||||||||||||||||||||||||||||    
T  20031985 tatattaaggtattattgtagatactgaattgtattaggaaattgattcatattatgcagaatttatgaaa 20032055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 20030963 - 20031098
Alignment:
Q  51 tagttagtagttgttgcttctgttgcaagttatcgaggcagataacaactagctagct-cttgaagttggttagctgaaattgtaatttgttag----ta 145  Q
    |||||||||||||||||||||||||||||| | ||||||||||  |||| | |||||| ||||||||||||||||||||||| || || || ||    |     
T  20030963 tagttagtagttgttgcttctgttgcaagtaaccgaggcagattccaaccaactagctacttgaagttggttagctgaaattttatttagtgagagaatt 20031062  T
Q  146 tcaaatcaattagaagttggctggagttaattagaa 181  Q
    |||||||||||||||||||| |||||||||||||||    
T  20031063 tcaaatcaattagaagttggttggagttaattagaa 20031098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 19836532 - 19836456
Alignment:
Q  222 tcattatgagttgaattgaataaggtaatcatctagttttctctcagtttccttctctttttctgttcttcatctaa 298  Q
    |||||||||||| |||||||||||  |||||||||||||||||||  ||||||||||||| || |||||||||||||    
T  19836532 tcattatgagttaaattgaataagagaatcatctagttttctctcgttttccttctctttctcggttcttcatctaa 19836456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 19851372 - 19851300
Alignment:
Q  54 ttagtagttgttgcttctgttgcaagttatcgaggcagataacaactagctagctcttgaagttggttagctgaaattgt 133  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||       |||||||||||||| ||||||||||    
T  19851372 ttagtagttgttgcttccggtgcaagttatcgaggcagataccaacta-------cttgaagttggttatctgaaattgt 19851300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 19958864 - 19958800
Alignment:
Q  54 ttagtagttgttgcttctgttgcaagttatcgaggcagataacaactagctagct-cttgaagtt 117  Q
    |||||||||||||||||||| |||||||||||||||||||   ||||| |||||| |||||||||    
T  19958864 ttagtagttgttgcttctgtcgcaagttatcgaggcagattcaaactaactagctacttgaagtt 19958800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 54800455 - 54800395
Alignment:
Q  397 aagtataggagcagaagaaaccagtattcattttcaaacataatctaaagggacaaccaaa 457  Q
    ||||||| | ||| ||||||| | |||||| ||||||||||||||||||||||||||||||    
T  54800455 aagtataagtgcataagaaacaactattcagtttcaaacataatctaaagggacaaccaaa 54800395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 20031118 - 20031153
Alignment:
Q  185 aatgcacaacttgtactgtatacaaatgtattgtgt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  20031118 aatgcacaacttgtactgtatacaaatgtattgtgt 20031153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 23565721 - 23565777
Alignment:
Q  401 ataggagcagaagaaaccagtattcattttcaaacataatctaaagggacaaccaaa 457  Q
    ||||| ||||||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  23565721 ataggtgcagaagaaacaactattcagtttcaaacataatctaaagggacaatcaaa 23565777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 26243828 - 26243884
Alignment:
Q  401 ataggagcagaagaaaccagtattcattttcaaacataatctaaagggacaaccaaa 457  Q
    ||||| ||||||||||| | |||||| |||||||||||||||||||||| |||||||    
T  26243828 ataggtgcagaagaaacaactattcaatttcaaacataatctaaagggataaccaaa 26243884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 43420490 - 43420540
Alignment:
Q  407 gcagaagaaaccagtattcattttcaaacataatctaaagggacaaccaaa 457  Q
    ||||||||||| | |||||| ||||||||||||||||||| ||||||||||    
T  43420490 gcagaagaaacaactattcaatttcaaacataatctaaagagacaaccaaa 43420540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 457
Target Start/End: Complemental strand, 4287316 - 4287260
Alignment:
Q  401 ataggagcagaagaaaccagtattcattttcaaacataatctaaagggacaaccaaa 457  Q
    ||||| ||||||||||| | |||||| ||||||| |||||||||||| |||||||||    
T  4287316 ataggtgcagaagaaacaactattcagtttcaaatataatctaaaggaacaaccaaa 4287260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 31309112 - 31309168
Alignment:
Q  401 ataggagcagaagaaaccagtattcattttcaaacataatctaaagggacaaccaaa 457  Q
    ||||| ||||||||||| |  ||||| ||||||||||||||||||| ||||||||||    
T  31309112 ataggtgcagaagaaacaacaattcaatttcaaacataatctaaagagacaaccaaa 31309168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 1391599 - 1391628
Alignment:
Q  50 ttagttagtagttgttgcttctgttgcaag 79  Q
    ||||||||||||||||||||||||||||||    
T  1391599 ttagttagtagttgttgcttctgttgcaag 1391628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 10613575 - 10613623
Alignment:
Q  409 agaagaaaccagtattcattttcaaacataatctaaagggacaaccaaa 457  Q
    ||||||||| | |||||| ||||||| |||||||||||| |||||||||    
T  10613575 agaagaaacaactattcagtttcaaatataatctaaaggaacaaccaaa 10613623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University