View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7225_high_1 (Length: 364)
Name: NF7225_high_1
Description: NF7225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7225_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 359
Target Start/End: Complemental strand, 44613281 - 44612935
Alignment:
| Q |
12 |
gtaaaagacagtgatccaataatgttcgaaattcacccacacctgctgcaaatagatcaaactgcaccagcacaacactcacagcagctgatacaacaaa |
111 |
Q |
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| T |
44613281 |
gtaaaagacagtgatccaataatgttcgaaattcacccacacctgctgcaaatagatcaaactgcaccagcacaacactcacagcagctgatacaacaaa |
44613182 |
T |
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| Q |
112 |
ggtaaagatgataaaggttggatagaagcagcacaaatgaattaagatataaagacccagcagcaccaaagcaccaacagcagcaccnnnnnnncaccca |
211 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |
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| T |
44613181 |
ggtaaagatgacaaagcttggatagaagcagcacaaatgaattaagatataaagacccagcagcaccaaaacaccaacaacagcacc-aaaaaacaccca |
44613083 |
T |
|
| Q |
212 |
ggacaaattttatgctataatctaacatcaacatgcctaacatcatgactaattacagctactgactaaagagaaatcatattcagcagagaaattacct |
311 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44613082 |
ggacaaattttatgctataatctaacatcaacttgcctaacatcatgactaattacagctactgactaaagagaaatcatattcagcagagaaattacct |
44612983 |
T |
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| Q |
312 |
tggtctcaagacatagaagacaagagatacctcttcttctcactcgac |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44612982 |
tggtctcaagacatagaagacaagagatacctcttcttcttactcgac |
44612935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 22248732 - 22248656
Alignment:
| Q |
283 |
agaaatcatattcagcagagaaattaccttggtctcaagacatagaagacaagagatacctcttcttctcactcgac |
359 |
Q |
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| T |
22248732 |
agaaatcatattcagcggagaaattatcttggtctcaagacatagaagacaagagatacctcttcttcttactcgac |
22248656 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 22248851 - 22248801
Alignment:
| Q |
210 |
caggacaaattttatgctataatctaacatcaacatgcctaacatcatgac |
260 |
Q |
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||||||| |||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
22248851 |
caggacagattttatgctataatctaacattaacttgcctaacatcatgac |
22248801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 9405147 - 9405200
Alignment:
| Q |
210 |
caggacaaattttatgctataatctaacatcaacatgcctaacatcatgactaa |
263 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9405147 |
caggacaaattttatgctataatctaacatcaacttgcctaacatcatgactaa |
9405200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 1993148 - 1993095
Alignment:
| Q |
210 |
caggacaaattttatgctataatctaacatcaacatgcctaacatcatgactaa |
263 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1993148 |
caggacatattttatgctataatctaacatcaacttgcctaacatcatgactaa |
1993095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 8960536 - 8960479
Alignment:
| Q |
283 |
agaaatcatattcagcagagaaattaccttggtctcaagacatagaagacaagagata |
340 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
8960536 |
agaaatcatattcagcagagaaaataccttggtgtcaagacatagaagacaagagata |
8960479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 8960655 - 8960602
Alignment:
| Q |
210 |
caggacaaattttatgctataatctaacatcaacatgcctaacatcatgactaa |
263 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8960655 |
caggacaagttttatgctataatctaacatcaacttgcctaacatcatgactaa |
8960602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 3298511 - 3298478
Alignment:
| Q |
210 |
caggacaaattttatgctataatctaacatcaac |
243 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
3298511 |
caggacaaattttatgttataatctaacatcaac |
3298478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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