View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7225_low_2 (Length: 358)
Name: NF7225_low_2
Description: NF7225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7225_low_2 |
 | |
|
| [»] scaffold0029 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 28961396 - 28961047
Alignment:
| Q |
1 |
tccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961396 |
tccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgag |
28961297 |
T |
|
| Q |
101 |
tgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961296 |
tgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatt |
28961197 |
T |
|
| Q |
201 |
aataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961196 |
aataagctcccgcatctctggcgtcagctcaggctaccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccga |
28961097 |
T |
|
| Q |
301 |
tagttagcagccaagttaccaagaccgtagagcttccctttcttcttctc |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961096 |
tagttagcagccaagttaccaagaccgtagagcttccctttcttcttctc |
28961047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 5020300 - 5020644
Alignment:
| Q |
1 |
tccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5020300 |
tccacaccatcctcttcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgag |
5020399 |
T |
|
| Q |
101 |
tgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5020400 |
cgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatg |
5020499 |
T |
|
| Q |
201 |
aataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5020500 |
aataagctcccgcatctctggcgtcagct--ggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccga |
5020597 |
T |
|
| Q |
301 |
tagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
347 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
5020598 |
tagttagcggccaagttaccaagaccatagagctttcctttcttctt |
5020644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 22122103 - 22122450
Alignment:
| Q |
1 |
tccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22122103 |
tccacaccatcctcctcctcatctctatcgaccgaataaggctcaacattgggacttaaaatcggcgagggatcttgagcctgtgcttgcctaaattgag |
22122202 |
T |
|
| Q |
101 |
tgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22122203 |
cgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctactgcgcgaattgctcttgtgccaatctatg |
22122302 |
T |
|
| Q |
201 |
aataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22122303 |
aataagctcccgcatctctggcgtcagctcaggctgccgagaggatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgccaga |
22122402 |
T |
|
| Q |
301 |
tagttagcagccaagttaccaagaccgtagagc-ttccctttcttctt |
347 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
22122403 |
tagttagcggccaagttaccaagaccatagagctttccctttcttctt |
22122450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 34631305 - 34630959
Alignment:
| Q |
1 |
tccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34631305 |
tccacaccatcctcctcctcatctgtatcgaccggataaggctcaacattgggacttaaaatcggcgagggatcttgagcctgtgcttgcctaaattgag |
34631206 |
T |
|
| Q |
101 |
tgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34631205 |
cgagctgctcctcataagatctttggcggttgagcaaatcttgcacaaaagccgcttgagtcgccatatgctgcgcgaattgctcttgtgccaatctatt |
34631106 |
T |
|
| Q |
201 |
aataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
34631105 |
tataagctcccgcatctctggcgtcagctcaggctgccgggaggatccttcaccatgattgagcgtaaatgtgagcgttgattcaacactacccggccga |
34631006 |
T |
|
| Q |
301 |
tagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
347 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
34631005 |
tagttagcggccaagttaccaagaccatagagcttacccttcttctt |
34630959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 34371521 - 34371183
Alignment:
| Q |
9 |
atcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagtgagctgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
34371521 |
atcctcctcctcatctctatcgaccggataaggctcaacattgagacttaaaaccggcgagggatcttgagcctgtgcttgcctaaattgagcgagctgc |
34371422 |
T |
|
| Q |
109 |
tcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaataagct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||| |
|
|
| T |
34371421 |
tcctcataagatctttggcggttgagcaaatcttgcacaatagccgcttgagtcgccatctgctgcgcaaatttctcttttgccaatctatgaataagct |
34371322 |
T |
|
| Q |
209 |
cccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatagttagc |
308 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34371321 |
cccgcatctttggcgtcagctcaggctgccaggaggatccttcaccatgattgagcgtaaatgtgagtgttgatgcaacactacccgcccgatagttagc |
34371222 |
T |
|
| Q |
309 |
agccaagttaccaagaccgtagagcttccctttcttctt |
347 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
34371221 |
ggccaagttaccaagaccatagagctttcccttcttctt |
34371183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 289
Target Start/End: Original strand, 40542707 - 40542913
Alignment:
| Q |
83 |
gtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattg |
182 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| || ||| ||| | ||||||||||||||||| ||| | ||| ||||||| || || | || || |
|
|
| T |
40542707 |
gtgcttgcctaaactgagtcagttgctcctcatattttcgttgtcggctaagcaaatcttgcacaacggcctcgtgactcgccatttgttgtgtgagctg |
40542806 |
T |
|
| Q |
183 |
ctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgat |
282 |
Q |
| |
|
|||||| | |||||| | |||||| || | ||| || | ||||| ||||||| || | ||||||||||||||||| || |||| | |||| |||| | |
|
|
| T |
40542807 |
ctcttgagtcaatctttgaataaggtcacacatttcagaggtcagtgcaggctgttggaaggatccttcaccatgattaagggtaagtctgagagttgct |
40542906 |
T |
|
| Q |
283 |
gcaacac |
289 |
Q |
| |
|
||||||| |
|
|
| T |
40542907 |
gcaacac |
40542913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 5598276 - 5598622
Alignment:
| Q |
1 |
tccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5598276 |
tccacaccatcctcctcctcatctctatcgaccggataaggctcaatattgggacttaaaaccagcgagggatcttgagcctgtgcttgcctaaattgag |
5598375 |
T |
|
| Q |
101 |
tgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5598376 |
cgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatg |
5598475 |
T |
|
| Q |
201 |
aataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccga |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5598476 |
aataagctcccgcatctctggcgttagctcaggctgccgggaggatccttcaccatgattgagcgtaaatgtgagtgttgatgcaacactacccgcccga |
5598575 |
T |
|
| Q |
301 |
tagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
347 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
5598576 |
tagttagcggccaagttaccaagaccatagagctttcctttcttctt |
5598622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 7626617 - 7626271
Alignment:
| Q |
1 |
tccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7626617 |
tccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaatcggcgagggatcttgagcctgtgcttgcctaaattgag |
7626518 |
T |
|
| Q |
101 |
tgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7626517 |
cgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatt |
7626418 |
T |
|
| Q |
201 |
aataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
7626417 |
tataagctcccgcatctctggcgtcagctcaggctgtcgggaggatccttcaccatgattgagcgtaaatgtgagcgttgattcaacactacccggccga |
7626318 |
T |
|
| Q |
301 |
tagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
347 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| || || |||||||| |
|
|
| T |
7626317 |
cagttagcggccaagttaccaagaccatagagtttacccttcttctt |
7626271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 67 - 347
Target Start/End: Complemental strand, 10998225 - 10997945
Alignment:
| Q |
67 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
166 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| ||| || |||||||| || ||||||||||||| | || ||||||||||| || |||||| | |||| |
|
|
| T |
10998225 |
gagggagcttgagcctgtgcttgcgtaagccgagccagatgctcctcgtataatctttggcggttaatcatatcttgcacaagggctgcttgacttgcca |
10998126 |
T |
|
| Q |
167 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
266 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
10998125 |
tctgctgcgtgaactgctcttgtgtcaatctatgaaaaagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccctgattgagggt |
10998026 |
T |
|
| Q |
267 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
347 |
Q |
| |
|
| | |||| |||||||||||||||||| || |||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
10998025 |
tagtctgagggttgatgcaacactaccctttcggtagttagcggctaagttaccaagaccatagagctttcctttcttctt |
10997945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 106 - 289
Target Start/End: Original strand, 7781666 - 7781849
Alignment:
| Q |
106 |
tgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaataa |
205 |
Q |
| |
|
||||||||||| | || ||||||| | || |||||||| ||||| ||| | || ||||||| ||||| | || |||||||| | |||||| | ||||| |
|
|
| T |
7781666 |
tgctcctcatatgttcgttggcggctaagaaaatcttgtacaacggcctcgtgtctcgccatttgctgggtgagctgctcttgagtcaatctttgaataa |
7781765 |
T |
|
| Q |
206 |
gctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
289 |
Q |
| |
|
| || |||||||| || |||||| |||||||| |||| ||||||||||||||||| || |||||| |||| |||| |||||||| |
|
|
| T |
7781766 |
ggtcacgcatctcaggggtcagcgcaggctgctgggaggatccttcaccatgattaagggtaaatctgagggttgttgcaacac |
7781849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 51269302 - 51269334
Alignment:
| Q |
35 |
gataaggctcaacattgggacttaaaaccggcg |
67 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
51269302 |
gataaggctcaacattcggacttaaaaccggcg |
51269334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 67 - 347
Target Start/End: Original strand, 7430377 - 7430657
Alignment:
| Q |
67 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
166 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||| ||||||||||| || ||||||||||||| | ||||| |||||||| ||||||||| |||||| |
|
|
| T |
7430377 |
gagggatcttgagcctgtgcttgcgtaagccgagccagctgctcctcgtataatctttggcggttaatcaaatattgcacaagggccgcttgactcgcca |
7430476 |
T |
|
| Q |
167 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
266 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| || |
|
|
| T |
7430477 |
tctgctgcgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccatgattgagggt |
7430576 |
T |
|
| Q |
267 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
347 |
Q |
| |
|
| | |||| ||||||||||||||| ||| ||| ||||||||||| ||||||||| || | |||||||| ||||||||||| |
|
|
| T |
7430577 |
tagtctgagggttgatgcaacactatccgtccggtagttagcagctaagttaccacgaacatagagctttcctttcttctt |
7430657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 34 - 347
Target Start/End: Complemental strand, 14606759 - 14606436
Alignment:
| Q |
34 |
ggataaggctcaacattgggacttaaaaccggcg----------agggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||| || |||||| |
|
|
| T |
14606759 |
ggataaggctcaacattgggacttaaaaccggcgctctagtgggagggatcttgagcctgtgcttgcctaagctgagccagctgctcctcgtatgatctt |
14606660 |
T |
|
| Q |
124 |
tggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcg |
223 |
Q |
| |
|
||| |||| ||||||||| ||||| | ||||||| | ||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||| | |
|
|
| T |
14606659 |
tggaggttaagcaaatctgccacaagggtcgcttgacttgccatctgctgcgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggtg |
14606560 |
T |
|
| Q |
224 |
tcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaag |
323 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||||||| || | | |||| ||||||||||||||| || ||| |||||||| || ||||| ||||| |
|
|
| T |
14606559 |
tcagctcatgctgctgggaggatccttcaccatgattgagggttagtctgagggttgatgcaacactatccttccggtagttagcggctaagtttccaag |
14606460 |
T |
|
| Q |
324 |
accgtagagcttccctttcttctt |
347 |
Q |
| |
|
||| |||||||| ||||||||||| |
|
|
| T |
14606459 |
accatagagctttcctttcttctt |
14606436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 6052409 - 6052681
Alignment:
| Q |
8 |
catcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcg------------agggatcttgagcttgtgcttgcctaaa |
95 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||| |
|
|
| T |
6052409 |
catcatcctcctcatctctatcaactggataaggctcaacattgggacttaaaaacagcgctctagtgtgggagggatcttgagcatgtgcttgcctaaa |
6052508 |
T |
|
| Q |
96 |
ttgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaat |
195 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||| ||||||| ||||||||| | |||||||||| |||| |
|
|
| T |
6052509 |
ctgagccagctgctcctcatatgatctttggcggttaagcaaatcttgctcaacggccgcttgactcgccatttgctgcgcggactgctcttgtgtcaat |
6052608 |
T |
|
| Q |
196 |
ctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaa |
268 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||| |
|
|
| T |
6052609 |
ctatgaataagctcccgcatctctggggtcagctcaggctgctgggagaatccttcaccatgattgagggtaa |
6052681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 67 - 347
Target Start/End: Original strand, 52784 - 53064
Alignment:
| Q |
67 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
166 |
Q |
| |
|
|||||| ||||| | ||||||||| ||| | |||| ||||||||||| || ||||||||||||| | ||| |||||||||| || |||||| | |||| |
|
|
| T |
52784 |
gagggagcttgatcctgtgcttgcataagtcgagtcagctgctcctcgtataatctttggcggttaatcaattcttgcacaagggctgcttgacttgcca |
52883 |
T |
|
| Q |
167 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
266 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
52884 |
tctgctgcgagaactgctcttgtgacaatctatgaatgagctcccgcatctctggcgtcagctgaggctgctgggaggttccttcaccctgattgagggt |
52983 |
T |
|
| Q |
267 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
347 |
Q |
| |
|
| | |||| |||||||||||||| ||| |||||||||||| || ||||||||||| || |||||||| ||||||||||| |
|
|
| T |
52984 |
tagtctgagggttgatgcaacacttcccttccgatagttagcggctaagttaccaaggccatagagctttcctttcttctt |
53064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 52739 - 52772
Alignment:
| Q |
34 |
ggataaggctcaacattgggacttaaaaccggcg |
67 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
52739 |
ggataaggctcaacattcggacttaaaaccggcg |
52772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 67 - 347
Target Start/End: Complemental strand, 22016137 - 22015857
Alignment:
| Q |
67 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
166 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| ||| ||||||||||| || |||||||| |||| | |||||||||||||| | |||||| | ||| |
|
|
| T |
22016137 |
gagggagcttgagcctgtgcttgcgtaagccgagccagctgctcctcgtataatctttggtggttaatcaaatcttgcacaagggatgcttgactttcca |
22016038 |
T |
|
| Q |
167 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
266 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
22016037 |
tctgctgtgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccctgattgagggt |
22015938 |
T |
|
| Q |
267 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
347 |
Q |
| |
|
| | |||| |||||||||||||| ||| ||| |||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
22015937 |
tagtctgagggttgatgcaacactgcccttccggtagttagcggctaagttaccaagaccatagagctttcctttcttctt |
22015857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 67 - 347
Target Start/End: Complemental strand, 44326245 - 44325965
Alignment:
| Q |
67 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
166 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| ||| ||||||||||| || |||||||| |||| | |||||||||||||| | |||||| | ||| |
|
|
| T |
44326245 |
gagggagcttgagcctgtgcttgcgtaagccgagccagctgctcctcgtataatctttggtggttaatcaaatcttgcacaagggatgcttgactttcca |
44326146 |
T |
|
| Q |
167 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
266 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
44326145 |
tctgctgtgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccctgattgagggt |
44326046 |
T |
|
| Q |
267 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
347 |
Q |
| |
|
| | |||| |||||||||||||| ||| ||| |||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
44326045 |
tagtctgagggttgatgcaacactgcccttccggtagttagcggctaagttaccaagaccatagagctttcctttcttctt |
44325965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 320
Target Start/End: Original strand, 6659819 - 6660054
Alignment:
| Q |
82 |
tgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaatt |
181 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||| | || ||||||| | ||||||||||| ||||| ||| | || ||||||| ||||| | || | |
|
|
| T |
6659819 |
tgtgcttgccgaaattgagccaattgctcctcatatgttcgttggcggctaagcaaatcttgtacaacggcctcatgtctcgccatttgctgggtgagct |
6659918 |
T |
|
| Q |
182 |
gctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttga |
281 |
Q |
| |
|
||||||| | |||||| | |||||| || |||||||| || ||||| |||||||| |||| |||||||| |||||||| || |||||| |||| |||| |
|
|
| T |
6659919 |
gctcttgagtcaatctttgaataaggtcacgcatctcaggggtcagtgcaggctgctgggaggatccttcgccatgattaagggtaaatctgagggttgt |
6660018 |
T |
|
| Q |
282 |
tgcaacactacccgcccgatagttagcagccaagttacc |
320 |
Q |
| |
|
|||||| |||| ||| |||||||| ||||||||||| |
|
|
| T |
6660019 |
tgcaac---acccttccggtagttagcggccaagttacc |
6660054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 289
Target Start/End: Complemental strand, 23450353 - 23450146
Alignment:
| Q |
82 |
tgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaatt |
181 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||| | || ||||||| | ||||||||||| ||||| ||| | || ||||||| ||||| | || | |
|
|
| T |
23450353 |
tgtgcttgccgaaattgagccagttgctcctcatatgttcgttggcggctaagcaaatcttgtacaacggcctcatgtctcgccatttgctgggtgagct |
23450254 |
T |
|
| Q |
182 |
gctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttga |
281 |
Q |
| |
|
||||||| | |||||| | |||||| || ||||||| || ||||| |||||||| |||| |||||||| |||||||| || |||||| |||| |||| |
|
|
| T |
23450253 |
gctcttgagtcaatctttgaataaggtcatgcatctcaggggtcagtgcaggctgctgggaggatccttcgccatgattaagggtaaatctgagggttgt |
23450154 |
T |
|
| Q |
282 |
tgcaacac |
289 |
Q |
| |
|
|||||||| |
|
|
| T |
23450153 |
tgcaacac |
23450146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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