View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7225_low_3 (Length: 349)
Name: NF7225_low_3
Description: NF7225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7225_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 27 - 343
Target Start/End: Original strand, 2332091 - 2332409
Alignment:
| Q |
27 |
ggaaacttatgttaatgttaaatgtcatggttttagatcatgcttgtatttatttattcctttctttacccaaaaaagataacttaaaacacagacaaat |
126 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2332091 |
ggaagcttatgttaatgttaaatgtcatggttttagatcatgcttgtatttatttattcctttctttacccaaaaaagataacttaaaacacagacaaat |
2332190 |
T |
|
| Q |
127 |
tttgtactttttgagggaaattagtcnnnnnnnnttaaaacacttcaannnnnnnnnn---aagcttttagattcggtttttactatagatcatccacta |
223 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2332191 |
tttgtactttttgatggaaattagtcaaaaaaaattaaa-cacttcaatttttttttttttaagcttttagattcgggttttactatagatcatccacta |
2332289 |
T |
|
| Q |
224 |
aaagtcatatttatctatgtttggtaagtaaagttgaaaattcttgtccgactcttcactacttactcgtgttctcaaagccaaatactttctacggagg |
323 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
|
|
| T |
2332290 |
aaagtcatatttatctatgtttgataagcaaagttgaaaattcttgtccgactcttcactacttactcgtgttctcaaagccaaatacttcatgtgtagg |
2332389 |
T |
|
| Q |
324 |
gatttttggatgtccatctc |
343 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2332390 |
gatttttggatgtccatctc |
2332409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 13093865 - 13093771
Alignment:
| Q |
237 |
tctatgtttggtaagtaaagttgaaaattcttgtccgactct---tcactacttactcgtgttctcaaagccaaatactttctacggagggattt |
328 |
Q |
| |
|
|||||| |||||||| ||||||| ||| ||||| |||||||| || ||||||||||||| ||||||| ||||||||||| ||| |||||||| |
|
|
| T |
13093865 |
tctatgcttggtaagcaaagttggaaactcttgaccgactctacctccttacttactcgtgtcctcaaagacaaatactttccacgaagggattt |
13093771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 13022341 - 13022247
Alignment:
| Q |
237 |
tctatgtttggtaagtaaagttgaaaattcttgtccgactct---tcactacttactcgtgttctcaaagccaaatactttctacggagggattt |
328 |
Q |
| |
|
|||||| |||||||| ||||||| ||| ||||| |||||||| || ||||||||||||| ||||||| ||||||||| | ||| |||||||| |
|
|
| T |
13022341 |
tctatgcttggtaagcaaagttggaaactcttgaccgactctacctccttacttactcgtgtcctcaaagacaaatacttcccacgaagggattt |
13022247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 42704150 - 42704072
Alignment:
| Q |
235 |
tatctatgtttggtaagtaaagttgaaaattcttgtccgactcttc---actacttactcgtgttctcaaagccaaata |
310 |
Q |
| |
|
|||||||||| |||||| ||||||| ||| ||||||| ||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
42704150 |
tatctatgttaggtaagcaaagttggaaactcttgtctaactcttcttcacttcttactcgtgttctcaaagccaaata |
42704072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 328
Target Start/End: Original strand, 43968706 - 43968802
Alignment:
| Q |
235 |
tatctatgtttggtaagtaaagttgaaaattcttgtccgactct---tcactacttactcgtgttctcaaagccaaatactttctacggagggattt |
328 |
Q |
| |
|
|||||||| |||||||| |||||| ||| ||||| |||||||| || ||||||||||||| ||| ||||||||||||| | ||| |||||||| |
|
|
| T |
43968706 |
tatctatgcttggtaagcaaagtttgaaactcttgaccgactctacctccttacttactcgtgtcctcgaagccaaatacttcccacgaagggattt |
43968802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University