View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_high_17 (Length: 270)
Name: NF7226_high_17
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 9584029 - 9584156
Alignment:
| Q |
138 |
gattttcaaggaattgaaaagataaagaacactctaatatgtaactttaactttcagctactgcataatgcataatctgccatagtagtgataagttaaa |
237 |
Q |
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| T |
9584029 |
gattttcaaggaattgaaaagataaagaacactctaatatgtaactttaactttcagctactgcataattcataatctgccatagtagtgataagttaaa |
9584128 |
T |
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| Q |
238 |
caatacataaacattgttg-atgtccat |
264 |
Q |
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| T |
9584129 |
caatacataaacattgttgcatgtccat |
9584156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 9578569 - 9578675
Alignment:
| Q |
149 |
aattgaaaagataaagaacactctaatatgtaactttaactttcagctactgcataatgcataatctgccatagtagtgataagttaaacaatacataaa |
248 |
Q |
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| T |
9578569 |
aattgaaaagataaagaacactctaatatgtaactttaactttcagctactgcataattcataatctgccatagtagtgataagttaaacaatacataaa |
9578668 |
T |
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| Q |
249 |
cattgtt |
255 |
Q |
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||||||| |
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| T |
9578669 |
cattgtt |
9578675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 9583890 - 9583934
Alignment:
| Q |
19 |
atttccttctcaaagagcataaagaaggacaattagttgagctga |
63 |
Q |
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| T |
9583890 |
atttccttctcaaagagcataaagaaggacaattagttgagctga |
9583934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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