View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_high_2 (Length: 553)
Name: NF7226_high_2
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 33246590 - 33246068
Alignment:
| Q |
1 |
attttcaggaacaacaatgatgtcgtcgtgtaattcttctccgtgtgcagcgtgcaagattcagcgtcgaaaatgcactaaggaatgcatttttgcaccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33246590 |
attttcaggaacaacaatgatgtcgtcgtgtaattcttctccgtgtgcagcgtgcaagattcagcgtcgaaaatgcactaaggaatgcatttttgcaccc |
33246491 |
T |
|
| Q |
101 |
tattttccgccggaaaatcctcaaaagtttacctacgtccacaaagtcttcggtgctagcaacgtggcaaagttactcaacgaggttgatgcttctcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33246490 |
tattttccgccggaaaatcctcaaaagtttacctacgtccacaaagtcttcggtgctagcaacgtggcaaagttactcaacgaggttgatgcttctcaac |
33246391 |
T |
|
| Q |
201 |
gtgaagatgctgttaagtctttagcttatgaagcagaagcgcgtttgagagatcctgtttatggttgtgttggtcttatttcacatcttcagaataagct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33246390 |
gtgaagatgctgttaagtctttagcttatgaagcagaagcgcgtttgagagatcctgtttatggttgtgttggtcttatttcacatcttcagaataagct |
33246291 |
T |
|
| Q |
301 |
taagaatttgcagaatgaacttaatgttgctaagaaagaacttgctacttatgttggtcctcagatcatgcttcctactccgatgacggcggtgtcgagt |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33246290 |
taagaatttgcagaatgaacttaacgttgctaagaaagaacttgctacttatgttggtcctcagatcatgcttcctactccgatgacggcggtgtcgagt |
33246191 |
T |
|
| Q |
401 |
tcttatttttctgttacttcttcttctgttcatcaacagcgtcaagagtttttcactttcaatgctgaaaactcgttttctaataactttcagatgaacc |
500 |
Q |
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| T |
33246190 |
tcttatttttctgttacttcttcttctgttcatcaacagcgtcaagagtttttcactttcaatgctgaaaactcgttttctaataactttcagatgaacc |
33246091 |
T |
|
| Q |
501 |
cttttcagaatcagttaatggtt |
523 |
Q |
| |
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| T |
33246090 |
cttttcagaatcagttaatggtt |
33246068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 34675394 - 34675444
Alignment:
| Q |
224 |
gcttatgaagcagaagcgcgtttgagagatcctgtttatggttgtgttggt |
274 |
Q |
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||||||||||| || || ||| ||||||||||||||||||||||||||||| |
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| T |
34675394 |
gcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggt |
34675444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 41 - 363
Target Start/End: Original strand, 6650105 - 6650427
Alignment:
| Q |
41 |
ccgtgtgcagcgtgcaagattcagcgtcgaaaatgcactaaggaatgcatttttgcaccctattttccgccggaaaatcctcaaaagtttacctacgtcc |
140 |
Q |
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|||||||| ||||| ||| ||| || |||||||||||| | || || |||||||||| |||||||| ||||| |||||||||| ||| | || || | |
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| T |
6650105 |
ccgtgtgcggcgtgtaagtttctccggcgaaaatgcactcaagagtgtgtttttgcaccgtattttccaccggacaatcctcaaagatttgcatatgtac |
6650204 |
T |
|
| Q |
141 |
acaaagtcttcggtgctagcaacgtggcaaagttactcaacgaggttgatgcttctcaacgtgaagatgctgttaagtctttagcttatgaagcagaagc |
240 |
Q |
| |
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||||||| || || ||||| |||||||||||| | | |||||| || | || | || ||||| || || |||||||| || |||||||| || || || |
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| T |
6650205 |
acaaagtttttggagctagtaacgtggcaaagctgttaaacgagcttaacgcgacgcagcgtgatgacgcggttaagtcgttggcttatgaggccgaggc |
6650304 |
T |
|
| Q |
241 |
gcgtttgagagatcctgtttatggttgtgttggtcttatttcacatcttcagaataagcttaaga-atttgcagaatgaacttaatgttgctaagaaaga |
339 |
Q |
| |
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||| |||| ||||| |||||||||||||||||||||||||||| ||||||| |||||| ||||| | | || |||||||||| ||||||||| || |
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| T |
6650305 |
gcggctgagggatccagtttatggttgtgttggtcttatttcacttcttcagcataagc-taagagctattcaaggtgaacttaataatgctaagaagga |
6650403 |
T |
|
| Q |
340 |
acttgctacttatgttggtcctca |
363 |
Q |
| |
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||||||||||||| |||| ||||| |
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|
| T |
6650404 |
acttgctacttatattgggcctca |
6650427 |
T |
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