View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7226_high_22 (Length: 201)

Name: NF7226_high_22
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7226_high_22
NF7226_high_22
[»] chr7 (7 HSPs)
chr7 (59-201)||(13742861-13743002)
chr7 (59-201)||(13123679-13123821)
chr7 (59-201)||(12710608-12710750)
chr7 (78-171)||(13006601-13006694)
chr7 (1-37)||(12710766-12710802)
chr7 (1-37)||(13123837-13123873)
chr7 (1-37)||(13742781-13742817)
[»] scaffold0029 (2 HSPs)
scaffold0029 (59-201)||(111083-111225)
scaffold0029 (1-37)||(111033-111069)
[»] chr2 (4 HSPs)
chr2 (69-201)||(26583007-26583139)
chr2 (1-37)||(26582951-26582987)
chr2 (1-37)||(23169163-23169199)
chr2 (1-37)||(23580420-23580456)
[»] chr4 (2 HSPs)
chr4 (59-201)||(8046597-8046739)
chr4 (1-37)||(8046763-8046799)
[»] chr6 (7 HSPs)
chr6 (59-198)||(29614912-29615051)
chr6 (78-171)||(12167532-12167625)
chr6 (78-171)||(19286441-19286534)
chr6 (78-171)||(19877625-19877718)
chr6 (78-171)||(19883401-19883494)
chr6 (78-171)||(19786662-19786754)
chr6 (1-37)||(29615065-29615101)
[»] scaffold1773 (2 HSPs)
scaffold1773 (59-201)||(329-471)
scaffold1773 (1-37)||(247-283)
[»] chr8 (3 HSPs)
chr8 (59-201)||(23865762-23865904)
chr8 (1-37)||(23865710-23865746)
chr8 (1-37)||(19902794-19902830)
[»] scaffold0117 (1 HSPs)
scaffold0117 (59-201)||(9340-9482)
[»] chr5 (2 HSPs)
chr5 (59-171)||(23527779-23527892)
chr5 (1-37)||(23527725-23527761)
[»] scaffold0026 (1 HSPs)
scaffold0026 (57-201)||(12594-12738)
[»] scaffold0634 (1 HSPs)
scaffold0634 (69-201)||(2893-3025)
[»] chr1 (1 HSPs)
chr1 (78-171)||(41111109-41111202)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-37)||(174426-174462)
[»] scaffold0456 (2 HSPs)
scaffold0456 (126-201)||(273-348)
scaffold0456 (126-201)||(7418-7493)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13742861 - 13743002
Alignment:
Q  59 attcacttattttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggt 158  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13742861 attcacttgttttcatacacaatcacctccaacatt-actaacaccaattaatccaatcctcggctcgttctaataggattcggttacctacaccagggt 13742959  T
Q  159 tatactagttaaaagaaatattatagaatgctcaagaagtccc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13742960 tatactagttaaaagaaatattatagaatgctcaagaagtccc 13743002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 13123821 - 13123679
Alignment:
Q  59 attcacttattttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggt 158  Q
    |||||||||||| |||||||||||| | |||||||||||||| |||||| |||||||||  || || ||||||||||| ||| | ||||||||||| |||    
T  13123821 attcacttatttacatacacaatcaacaccaacatttactaataccaatcaatccaatcaccggcttgttctaataggcttctgctacctacaccaaggt 13123722  T
Q  159 tatactagttaaa-agaaatattatagaatgctcaagaagtccc 201  Q
    ||||||||||||| || ||  |||||||||||||||||||||||    
T  13123721 tatactagttaaagaggaa-gttatagaatgctcaagaagtccc 13123679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 12710750 - 12710608
Alignment:
Q  59 attcacttattttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggt 158  Q
    |||||||||||| |||||||||||| | |||||||||||||| |||||| |||||||||  || || ||| ||||||| |||   ||||||||||| |||    
T  12710750 attcacttatttacatacacaatcaacaccaacatttactaataccaatcaatccaatcaccggcttgttataataggcttcttctacctacaccaaggt 12710651  T
Q  159 tatactagttaaa-agaaatattatagaatgctcaagaagtccc 201  Q
    ||||||||||||| || ||  |||||||||||||||||||||||    
T  12710650 tatactagttaaagaggaa-gttatagaatgctcaagaagtccc 12710608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 13006601 - 13006694
Alignment:
Q  78 caatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggttatactagttaaa 171  Q
    ||||||||||| ||||| |||||||||||| |||||||||   | || |||  ||||||||| ||| |||||||||||||||||| ||||||||    
T  13006601 caatcatctccgacattcactaacaccaatcaatccaatcactggctagtttaaataggatttggtcacctacaccagggttatattagttaaa 13006694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12710802 - 12710766
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  12710802 tataattatgcacatacatcaatcacattcctcatgt 12710766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13123873 - 13123837
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  13123873 tataattatgcacatacatcaatcacattcctcatgt 13123837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13742781 - 13742817
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  13742781 tataattatgctcatacatcaatcacattccacatgt 13742817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 111083 - 111225
Alignment:
Q  59 attcacttattttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggt 158  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  || || ||||||||||||||| |||||||||||||||||    
T  111083 attcacttgttttcatacacaatcatctccaacatttactaacaccaatcaatccaatcaccggcttgttctaataggattcagttacctacaccagggt 111182  T
Q  159 tatactagttaaaagaaatattatagaatgctcaagaagtccc 201  Q
    ||||||||||||| || | ||||||||||||||||||||||||    
T  111183 tatactagttaaaggagaaattatagaatgctcaagaagtccc 111225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 111033 - 111069
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    |||||||| ||||||||||||||||||||||||||||    
T  111033 tataattacgcacatacatcaatcacattccacatgt 111069  T

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Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 26583007 - 26583139
Alignment:
Q  69 tttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggttatactagtt 168  Q
    |||||||| |||||||||||||||||||||||||||||| ||| | |||  || || |||||||||||| ||||||||||||||||||||||||||||||    
T  26583007 tttcatactcaatcatctccaacatttactaacaccaatcaattcgatcaccggctagttctaataggagtcggttacctacaccagggttatactagtt 26583106  T
Q  169 aaaagaaatattatagaatgctcaagaagtccc 201  Q
    |||||||||||||||||||||||||||||||||    
T  26583107 aaaagaaatattatagaatgctcaagaagtccc 26583139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26582951 - 26582987
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  26582951 tataattatgcgcatacatcaatcacattccacatgt 26582987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23169199 - 23169163
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  23169199 tataattatgcgcatacatcattcacattccacatgt 23169163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23580456 - 23580420
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  23580456 tataattatgcgcatacatcattcacattccacatgt 23580420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 8046739 - 8046597
Alignment:
Q  59 attcacttattttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggt 158  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  || || |||||||||||||||||||||||||||||||||    
T  8046739 attcacttgttttcatacacaatcatctccaacatttactaacaccaatcaatccaatcgccggcttgttctaataggattcggttacctacaccagggt 8046640  T
Q  159 tatactagttaaa-agaaatattatagaatgctcaagaagtccc 201  Q
    ||||||||||||| || ||  |||||||||||||||||||||||    
T  8046639 tatactagttaaagaggaa-gttatagaatgctcaagaagtccc 8046597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8046799 - 8046763
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    |||||||||||||| ||||||||||||||||||||||    
T  8046799 tataattatgcacacacatcaatcacattccacatgt 8046763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 7e-45; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 29615051 - 29614912
Alignment:
Q  59 attcacttattttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggt 158  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||||  || |||||||||||| ||||| ||||||||  |||||||    
T  29615051 attcacttgttttcatactcaatcatctccaacatttactaacaccaatcaattcaatcaccggctcgttctaataagattctgttacctatgccagggt 29614952  T
Q  159 tatactagttaaaagaaatattatagaatgctcaagaagt 198  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  29614951 tatactagttaaaggaaatattatagaatgctcaagaagt 29614912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 12167532 - 12167625
Alignment:
Q  78 caatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggttatactagttaaa 171  Q
    ||||||||||| ||||| |||||||||||| |||||||||   | || |||  ||||||||| ||| |||||||||||||||||| ||||||||    
T  12167532 caatcatctccgacattcactaacaccaatcaatccaatcactggctagtttaaataggatttggtcacctacaccagggttatattagttaaa 12167625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 19286441 - 19286534
Alignment:
Q  78 caatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggttatactagttaaa 171  Q
    ||||||||||| ||||| |||||||||||| |||||||||   | || |||  ||||||||| ||| |||||||||||||||||| ||||||||    
T  19286441 caatcatctccgacattcactaacaccaatcaatccaatcactggctagtttaaataggatttggtcacctacaccagggttatattagttaaa 19286534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 19877625 - 19877718
Alignment:
Q  78 caatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggttatactagttaaa 171  Q
    ||||||||||| ||||| |||||||||||| |||||||||   | || |||  ||||||||| ||| |||||||||||||||||| ||||||||    
T  19877625 caatcatctccgacattcactaacaccaatcaatccaatcactggctagtttaaataggatttggtcacctacaccagggttatattagttaaa 19877718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 19883401 - 19883494
Alignment:
Q  78 caatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggttatactagttaaa 171  Q
    ||||||||||| ||||| |||||||||||| |||||||||   | || |||  ||||||||| ||| |||||||||||||||||| ||||||||    
T  19883401 caatcatctccgacattcactaacaccaatcaatccaatcactggctagtttaaataggatttggtcacctacaccagggttatattagttaaa 19883494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 19786754 - 19786662
Alignment:
Q  78 caatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggttatactagttaaa 171  Q
    ||||||||||  ||||| |||||||||||| |||||||||   | || |||  ||||||||| ||| |||||||||||||||||| ||||||||    
T  19786754 caatcatctctgacattcactaacaccaatcaatccaatcactggctagtttaaataggatt-ggtcacctacaccagggttatattagttaaa 19786662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29615101 - 29615065
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  29615101 tataattattcacatacatcaatcacattccacatgt 29615065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 329 - 471
Alignment:
Q  59 attcacttattttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggt 158  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||   | || ||||||||||||||||||||||||||||| |||    
T  329 attcacttgttttcatacaccatcatctccaacatttactaacaccaatcaatccaatcactggcttgttctaataggattcggttacctacaccaaggt 428  T
Q  159 tatactagttaaa-agaaatattatagaatgctcaagaagtccc 201  Q
    ||||||||||||| || ||  |||||||||||||||||||||||    
T  429 tatactagttaaagaggaa-gttatagaatgctcaagaagtccc 471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 247 - 283
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    |||||||||||||| ||||||||||||||||||||||    
T  247 tataattatgcacacacatcaatcacattccacatgt 283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 3e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 23865762 - 23865904
Alignment:
Q  59 attcacttattttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggt 158  Q
    |||||||||||| ||||||||||||   |||||||||||||| |||||| |||||||||  || || ||||||||||| ||| | ||||||||||| |||    
T  23865762 attcacttatttacatacacaatcaataccaacatttactaataccaatcaatccaatcaccggcttgttctaataggcttctgctacctacaccaaggt 23865861  T
Q  159 tatactagttaaa-agaaatattatagaatgctcaagaagtccc 201  Q
    ||||||||||||| || ||  |||||||||||||||||||||||    
T  23865862 tatactagttaaagaggaa-gttatagaatgctcaagaagtccc 23865904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23865710 - 23865746
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  23865710 tataattatgcacatacatcaatcacattcctcatgt 23865746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19902830 - 19902794
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    |||||| |||||||||||||||||||||||| |||||    
T  19902830 tataatcatgcacatacatcaatcacattcctcatgt 19902794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 9482 - 9340
Alignment:
Q  59 attcacttattttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggt 158  Q
    ||||||||||||||||||||||||| | ||||||||||||||  ||||| |||||| ||  || || ||||||||||| ||| | ||||||||||| |||    
T  9482 attcacttattttcatacacaatcaacaccaacatttactaatgccaatcaatccagtcaccggcttgttctaataggcttctgctacctacaccaaggt 9383  T
Q  159 tatactagttaaa-agaaatattatagaatgctcaagaagtccc 201  Q
    ||||||||||||| || ||  ||| |||||||||||||||||||    
T  9382 tatactagttaaagaggaa-gttacagaatgctcaagaagtccc 9340  T

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Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 23527779 - 23527892
Alignment:
Q  59 attcacttattttcatacacaatcatctccaacatttactaacaccaatta-atccaatcctcgactcgttctaataggattcggttacctacaccaggg 157  Q
    ||||||||  ||||| || ||| |||||||||||||||||||||||||| | |||||| |  ||  | |||||||||||||| |||||||||||||||||    
T  23527779 attcacttgctttcacacccaaacatctccaacatttactaacaccaatcatatccaaacaccggattgttctaataggatttggttacctacaccaggg 23527878  T
Q  158 ttatactagttaaa 171  Q
    ||||||||||||||    
T  23527879 ttatactagttaaa 23527892  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23527725 - 23527761
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  23527725 tataattatgcacatacatcaatcacattccacatgt 23527761  T

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Target: scaffold0026 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 12738 - 12594
Alignment:
Q  57 acattcacttattttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagg 156  Q
    ||||||||||  |||| ||| ||||||||||||| ||| ||||||| |||  ||| | |||  || || |||||| |||||||| | |||||| || |||    
T  12738 acattcacttgatttcttactcaatcatctccaaaattcactaacatcaaccaattcgatcaccggcttgttctagtaggattctgatacctatacaagg 12639  T
Q  157 gttatactagttaaaagaaatattatagaatgctcaagaagtccc 201  Q
    | ||||| ||||||| |||||||| ||||||||||||||||||||    
T  12638 gatatacaagttaaaggaaatattttagaatgctcaagaagtccc 12594  T

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Target: scaffold0634 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 2893 - 3025
Alignment:
Q  69 tttcatacacaatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggttatactagtt 168  Q
    ||||| || ||||||||||||| ||| ||||||| |||  ||| | |||  || || |||||| | |||||| | |||||| || |||||||||| ||||    
T  2893 tttcaaactcaatcatctccaatattcactaacatcaaccaattcgatcaccggcttgttctagtgggattctggtacctatacaagggttatacaagtt 2992  T
Q  169 aaaagaaatattatagaatgctcaagaagtccc 201  Q
    ||| |||||||| ||||||||||||||||||||    
T  2993 aaaggaaatattttagaatgctcaagaagtccc 3025  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 41111109 - 41111202
Alignment:
Q  78 caatcatctccaacatttactaacaccaattaatccaatcctcgactcgttctaataggattcggttacctacaccagggttatactagttaaa 171  Q
    ||||||||||| ||||| |||||||||||| |||||||||   | || |||  ||||||||| ||| |||||||||||||||||| ||||||||    
T  41111109 caatcatctccgacattcactaacaccaatcaatccaatcactggctagtttaaataggatttggtcacctacaccagggttatattagttaaa 41111202  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 174462 - 174426
Alignment:
Q  1 tataattatgcacatacatcaatcacattccacatgt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  174462 tataattatgcacatacatcaatcacattccacatgt 174426  T

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Target: scaffold0456 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 273 - 348
Alignment:
Q  126 gttctaataggattcggttacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtccc 201  Q
    |||||| |||||||| | |||||| || | | |||||| |||| ||||||||||| |||||||||||||| |||||    
T  273 gttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaagatgtccc 348  T

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Target: scaffold0456; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 7418 - 7493
Alignment:
Q  126 gttctaataggattcggttacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtccc 201  Q
    |||||| |||||||| | |||||| || | | |||||| |||| ||||||||||| |||||||||||||| |||||    
T  7418 gttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaagatgtccc 7493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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