View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7226_high_7 (Length: 383)
Name: NF7226_high_7
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_high_7 |
 | |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 17137075 - 17136701
Alignment:
| Q |
9 |
gatatgaacacaagaacaagaaatgctgcgacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17137075 |
gatatgaacacaagaacaagaaatactgtcacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
17136976 |
T |
|
| Q |
109 |
ttgacaactttgagggaatcagtctccaaacacacctgcatcaactgcatttcctgagctttttccatagccatcattcctgcacaaaattcagcctcta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17136975 |
ttgacaactttgagggaatcagtctccaaacacacatgcatcaactgcatttcctgagctttttccatagccatcattcctgcacaaaattcagcctcta |
17136876 |
T |
|
| Q |
209 |
aaggtgttgcatttccaatgttgctagatctagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatgtctgccaat |
308 |
Q |
| |
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| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
17136875 |
acggagttgcatttccaatgttgctagatatagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatgtctgcccac |
17136776 |
T |
|
| Q |
309 |
ggaggatccatcacagttaaatttcaccatatcaccaataggaggtttccaaataatatccaaatgaggagtgac |
383 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17136775 |
ggaggatccatcacagttaatttttactatatcaccaataggaggtttccaaataatatccaaatgaggagtgac |
17136701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 6936582 - 6936956
Alignment:
| Q |
9 |
gatatgaacacaagaacaagaaatgctgcgacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6936582 |
gatatgaacacaagaacaagaaatactgtcacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
6936681 |
T |
|
| Q |
109 |
ttgacaactttgagggaatcagtctccaaacacacctgcatcaactgcatttcctgagctttttccatagccatcattcctgcacaaaattcagcctcta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6936682 |
ttgacaactttgagggaatcagtctccaaacacacatgcatcaactgcatttcctgagctttttccatagccatcattcctgcacaaaattcagcctcta |
6936781 |
T |
|
| Q |
209 |
aaggtgttgcatttccaatgttgctagatctagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatgtctgccaat |
308 |
Q |
| |
|
| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6936782 |
acggagttgcatttccaatgttgctagatatagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatgtctgcccac |
6936881 |
T |
|
| Q |
309 |
ggaggatccatcacagttaaatttcaccatatcaccaataggaggtttccaaataatatccaaatgaggagtgac |
383 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6936882 |
ggaggatccatcacagttaatttttactatatcaccaataggaggtttccaaataatatccaaatgaggagtgac |
6936956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 16310794 - 16310420
Alignment:
| Q |
9 |
gatatgaacacaagaacaagaaatgctgcgacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
108 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||| |
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|
| T |
16310794 |
gatatgaacacatgaacaagaaatgctatgacaaaaatccaagcaattttgccacctagctcgcatctgccaagggattccaatacctttgtggaaagca |
16310695 |
T |
|
| Q |
109 |
ttgacaactttgagggaatcagtctccaaacacacctgcatcaactgcatttcctgagctttttccatagccatcattcctgcacaaaattcagcctcta |
208 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
16310694 |
ttgaaaactttgagggaatcagtctctaaacacacatgcatcaactgcatttccttagctctttccatagccatcattcctgcataaaattcagcatcta |
16310595 |
T |
|
| Q |
209 |
aaggtgttgcatttccaatgttgctagatctagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatgtctgccaat |
308 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16310594 |
aagatgttgcatttccaatgttgctagaaatagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatggctgccaat |
16310495 |
T |
|
| Q |
309 |
ggaggatccatcacagttaaatttcaccatatcaccaataggaggtttccaaataatatccaaatgaggagtgac |
383 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||| || ||||||||| ||||| |||||||||||| |
|
|
| T |
16310494 |
ggaggatccatcacagttaaacttcaccatttcaccaataggaagtctccaaataacatccagatgaggagtgac |
16310420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 18491788 - 18491414
Alignment:
| Q |
9 |
gatatgaacacaagaacaagaaatgctgcgacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
108 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||| |
|
|
| T |
18491788 |
gatatgaacacatgaacaagaaatgctatgacaaaaatccaagcaattttgccacctagctcgcatctgccaagggattccaatacctttgtggaaagca |
18491689 |
T |
|
| Q |
109 |
ttgacaactttgagggaatcagtctccaaacacacctgcatcaactgcatttcctgagctttttccatagccatcattcctgcacaaaattcagcctcta |
208 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
18491688 |
ttgaaaactttgagggaatcagtctctaaacacacatgcatcaactgcatttccttagctctttccatagccatcattcctgcataaaattcagcatcta |
18491589 |
T |
|
| Q |
209 |
aaggtgttgcatttccaatgttgctagatctagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatgtctgccaat |
308 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18491588 |
aagatgttgcatttccaatgttgctagaaatagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatggctgccaat |
18491489 |
T |
|
| Q |
309 |
ggaggatccatcacagttaaatttcaccatatcaccaataggaggtttccaaataatatccaaatgaggagtgac |
383 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||| || ||||||||| ||||| |||||||||||| |
|
|
| T |
18491488 |
ggaggatccatcacagttaaacttcaccatttcaccaataggaagtctccaaataacatccagatgaggagtgac |
18491414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 18487578 - 18487270
Alignment:
| Q |
9 |
gatatgaacacaagaacaagaaatgctgcgacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
108 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||| |
|
|
| T |
18487578 |
gatatgaacacatgaacaagaaatgctatgacaaaaatccaagcaattttgccacctagctcgcatctgccaagggattccaatacctttgtggaaagca |
18487479 |
T |
|
| Q |
109 |
ttgacaactttgagggaatcagtctccaaacacacctgcatcaactgcatttcctgagctttttccatagccatcattcctgcacaaaattcagcctcta |
208 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
18487478 |
ttgaaaactttgagggaatcagtctctaaacacacatgcatcaactgcatttccttagctctttccatagccatcattcctgcataaaattcagcatcta |
18487379 |
T |
|
| Q |
209 |
aaggtgttgcatttccaatgttgctagatctagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatgtctgccaat |
308 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18487378 |
aagatgttgcatttccaatgttgctagaaatagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatggctgccaat |
18487279 |
T |
|
| Q |
309 |
ggaggatcc |
317 |
Q |
| |
|
||||||||| |
|
|
| T |
18487278 |
ggaggatcc |
18487270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 18626492 - 18626671
Alignment:
| Q |
9 |
gatatgaacacaagaacaagaaatgctgcgacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
108 |
Q |
| |
|
||||| |||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| || |
|
|
| T |
18626492 |
gatattaacacatgaacaagaaatgctatgacagaaatccaagcaattttgccacctagctcgcatctgccaagggattccaatacctttgttgaaacca |
18626591 |
T |
|
| Q |
109 |
ttgacaactttgagggaatcagtctccaaacacacctgcatcaactgcatttcctgagctttttccatagccatcattcc |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18626592 |
ttgacaactttgagggaatcagtctccaaacacacatgcatcaactgcatttcctgagctctttccatagccatcattcc |
18626671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 15103342 - 15103163
Alignment:
| Q |
9 |
gatatgaacacaagaacaagaaatgctgcgacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
108 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||| ||| | | |||||||||| ||| |
|
|
| T |
15103342 |
gatatgaacacatgaacaagaaatgctattacaaaaatccaagaaattttgccacctagctcgcatctgccaagggattccaatatctttgttgaaggca |
15103243 |
T |
|
| Q |
109 |
ttgacaactttgagggaatcagtctccaaacacacctgcatcaactgcatttcctgagctttttccatagccatcattcc |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15103242 |
ttgacaactttgagggaatcagtctccaaacacacatgcatcaactgcatttcctgagctctttccatagccatcattcc |
15103163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 11562730 - 11562862
Alignment:
| Q |
9 |
gatatgaacacaagaacaagaaatgctgcgacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
108 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
11562730 |
gatatgaacaca-gaacaagaaatgttatgacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactccaaaacctttattgaaagca |
11562828 |
T |
|
| Q |
109 |
ttgacaactttgagggaatcagtctccaaacaca |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11562829 |
ttgacaactttgagggaatcagtctccaaacaca |
11562862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 44176498 - 44176172
Alignment:
| Q |
9 |
gatatgaacacaagaacaagaaatgctgcgacaaaaatcccagcaattttgccacctagctcgcatctgccaagggactcctaaacctttgttgaaagca |
108 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| | ||| || ||||| || |||| |||||||||||| ||||| | ||||||||| || ||| |
|
|
| T |
44176498 |
gatatgaacacaagaacaggaaatgctttgacaaaagctcatgcagttctgccatcttgctctcatctgccaaggaactcccagacctttgttaaaggca |
44176399 |
T |
|
| Q |
109 |
ttgacaactttgagggaatcagtctccaaacacacctgcatcaactgcatttcctgagctttttccatagccatcattcctgcacaaaattcagcctcta |
208 |
Q |
| |
|
||||||| ||||| |||||||| || || || | ||||| | ||||| |||| |||||||||||||| | ||| | |||| || ||||| |||| |
|
|
| T |
44176398 |
atgacaaccttgagagaatcagtttctaagcaaatatgcattagatgcatctcctttgctttttccatagctaacatgcaggcactgaactcagcttcta |
44176299 |
T |
|
| Q |
209 |
aaggtgttgcatttccaatgttgctagatctagcccctagaaagtggtgattagaatctctaatcacaatgccaatggagccacaaggatgtctgccaat |
308 |
Q |
| |
|
||| | ||||| |||||||| ||||| ||||||||||||||| || ||| ||||||| |||||| |||| ||| ||||||||||| |||||||| |
|
|
| T |
44176298 |
aagaagatgcatggccaatgttactagaaatagcccctagaaagttagaatgagagtctctaaacacaattccaagggaaccacaaggatgactgccaat |
44176199 |
T |
|
| Q |
309 |
ggaggatccatcacagttaaatttcac |
335 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
44176198 |
ggaggagccatcacagttaaatttcac |
44176172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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