View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_low_11 (Length: 343)
Name: NF7226_low_11
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 50408161 - 50407851
Alignment:
| Q |
16 |
gataccatcgaattttccacttttccttttccttttagtgaagaagaagaattttgagttaaaaccgataacaggttttcctcttatctcaagataagaa |
115 |
Q |
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| T |
50408161 |
gataccatcgaattttccacttttccttttccttttagtgaagaagaagaattttgagttaaaaccgataacaggttttcctcttatctgaagataagaa |
50408062 |
T |
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| Q |
116 |
ttatccaagtcatacccatttacttgtgtaggggaaaagtatttcgtcactgttccttactctttaagatgaacctgtgtttcaccttgtattatgattg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50408061 |
ttatccaagtcatacccatttacttgtgtaggggaaaagtatttcgtcactgttccttactctttaagatgaacctgtgtttcaccttgtattatgattg |
50407962 |
T |
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| Q |
216 |
aaaaataattgttattatataccgtaagaaacaaaagttgagtttcatgnnnnnnngtgatgactaaaacaaaacttgcatgaaacaatacgcacgcttg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50407961 |
aaaaataattgttattatataccgtaagaaacaaaagttgagtttcatgtttttttgtgatgactaaaacaaaacttgcatgaaacaatatacacgcttg |
50407862 |
T |
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| Q |
316 |
ccctcgtttga |
326 |
Q |
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||||||||||| |
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| T |
50407861 |
ccctcgtttga |
50407851 |
T |
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