View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_low_12 (Length: 336)
Name: NF7226_low_12
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 20399513 - 20399245
Alignment:
| Q |
19 |
ggttcatcaattgggctaaaacttgttccactctcaactcccttatgtccactttgctcaacaactcttctaattgcttctttgagatttttatcttcac |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20399513 |
ggttcatcaattgggccaaaacttgttccactctcaactcccttatgtccactttgctcaacaactcttctaattgcttctttgagatttttatcttcac |
20399414 |
T |
|
| Q |
119 |
ctcagtagttgttttggcggcagcaccgttgctttttcccgcagagttaccctcgaatgctgaaaaatcccattcatcatcatcgtccttggtcaagtac |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20399413 |
ctcagtagttgttttggcagcagcaccgttgctttttcccgcagagttaccctcgaatgctgaaaaatcccattcatcatcatcgtccttggtcaagtac |
20399314 |
T |
|
| Q |
219 |
tttgttgatgattggtgcttcaagcagtttcccatttttggttttgcaattgagtgttgtttttctact |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20399313 |
tttgttgatgattggtgcttcaagcagtttcccatttttggttttgcaattgagtgttgtttttctact |
20399245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 20390440 - 20390305
Alignment:
| Q |
19 |
ggttcatcaattgggctaaaacttgttccactctcaactcccttatgtccactttgctcaacaactcttctaattgcttctttgagatttttatcttcac |
118 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | || ||||||||||| |
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| T |
20390440 |
ggttcatcaattgggctaaaacttgctccactctcaactcccttatgtcaactttgctcaacaactcttctaactgcttcttcgtaatctttatcttcac |
20390341 |
T |
|
| Q |
119 |
ctcagtagttgttttggcggcagcaccgttgctttt |
154 |
Q |
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||| || || |||||||| || ||||| |||||||| |
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| T |
20390340 |
ctcggttgtcgttttggcagcggcaccattgctttt |
20390305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 20413435 - 20413318
Alignment:
| Q |
19 |
ggttcatcaattgggctaaaacttgttccactctcaactcccttatgtccactttgctcaacaactcttctaattgcttctttgagatttttatcttcac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| || || |||||||| |
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| T |
20413435 |
ggttcatcaattgggctaaaacttgttccactctcaactcttttatgtccactttgcttaacaactcttctaactgcttctttgtaatcttgatcttcac |
20413336 |
T |
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| Q |
119 |
ctcagtagttgttttggc |
136 |
Q |
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|||||| |||| |||||| |
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| T |
20413335 |
ctcagtcgttgctttggc |
20413318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 20380526 - 20380391
Alignment:
| Q |
19 |
ggttcatcaattgggctaaaacttgttccactctcaactcccttatgtccactttgctcaacaactcttctaattgcttctttgagatttttatcttcac |
118 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||| |||||||||||||| |||| ||||||||| |||||||||| ||||| |||||||| |
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| T |
20380526 |
ggttcatcaattgggctaaaacttgctctaccctcaactccctcatgtccactttgcttaacagctcttctaactgcttctttgtaattttgatcttcac |
20380427 |
T |
|
| Q |
119 |
ctcagtagttgttttggcggcagcaccgttgctttt |
154 |
Q |
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||| || || |||||| || ||||||||||||||| |
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| T |
20380426 |
ctcggttgtcattttggtgggagcaccgttgctttt |
20380391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 20380329 - 20380282
Alignment:
| Q |
222 |
gttgatgattggtgcttcaagcagtttcccatttttggttttgcaatt |
269 |
Q |
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||||||||||| | ||||||||||||||||||||||||||| |||||| |
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| T |
20380329 |
gttgatgattgattcttcaagcagtttcccatttttggtttagcaatt |
20380282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 20390242 - 20390196
Alignment:
| Q |
223 |
ttgatgattggtgcttcaagcagtttcccatttttggttttgcaatt |
269 |
Q |
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|||||||||| | ||||||||||||||||||||||||| |||||||| |
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| T |
20390242 |
ttgatgattgattcttcaagcagtttcccatttttggtcttgcaatt |
20390196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 20413232 - 20413199
Alignment:
| Q |
234 |
tgcttcaagcagtttcccatttttggttttgcaa |
267 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
20413232 |
tgcttcatgcagtttcccatttttggttttgcaa |
20413199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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