View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_low_13 (Length: 336)
Name: NF7226_low_13
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 42819301 - 42819618
Alignment:
| Q |
1 |
tgctgcctcacatgcttattgtagtgcaaagcatgctgtggttggtttaactaaaaatgcagcagttgaacttggacaatttgggattagagttaattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42819301 |
tgctgcctcacatgcttattgtagtgcaaagcatgctgtggttggtttaactaaaaatgcagcagttgaacttggacaatttgggattagagttaattgt |
42819400 |
T |
|
| Q |
101 |
gtgtctccttatgctcttgcaactcctttagcaacacaatttgttggatgtaatgatggtgagcttgaaactaccatgaacatgttggctaaccttaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42819401 |
gtgtctccttatgctcttgcaactcctttagcaacacaatttgttggatgtaatgatggtgagcttgaaactaccatgaacatgttggctaaccttaagg |
42819500 |
T |
|
| Q |
201 |
gtgtaactttgaaaactgatgatgtggcaaatgcagtactttattttgctagtgacgattcgaggtatgtgagtggccataatttgctcatagatggagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42819501 |
gtgtaactttgaaaactgatgatgtggcaaatgcagtactttattttgctagtgacgattcgaggtatgtgagtggccataatttgctcatagatggagg |
42819600 |
T |
|
| Q |
301 |
attcagcattgttaatcc |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
42819601 |
attcagcattgttaatcc |
42819618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 42769445 - 42769762
Alignment:
| Q |
1 |
tgctgcctcacatgcttattgtagtgcaaagcatgctgtggttggtttaactaaaaatgcagcagttgaacttggacaatttgggattagagttaattgt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42769445 |
tgctgcctcacatgcttattgtagtgcaaagcatgctgtggttggtttaactaaaaatgcagcagttgaacttggaaaatttgggattagagttaattgt |
42769544 |
T |
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| Q |
101 |
gtgtctccttatgctcttgcaactcctttagcaacacaatttgttggatgtaatgatggtgagcttgaaactaccatgaacatgttggctaaccttaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
42769545 |
gtgtctccttatgctcttgcaactcctttagcaacacaatttgttggatgtaatgatggtgagcttgaaactaccatgaacacgttggctaatcttaagg |
42769644 |
T |
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| Q |
201 |
gtgtaactttgaaaactgatgatgtggcaaatgcagtactttattttgctagtgacgattcgaggtatgtgagtggccataatttgctcatagatggagg |
300 |
Q |
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|||| | |||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769645 |
gtgtgattttgaaaactgatgatgtggtaaatgcagcactttattttgctagtgatgattcgaggtatgtgagtggccataatttgctcatagatggagg |
42769744 |
T |
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| Q |
301 |
attcagcattgttaatcc |
318 |
Q |
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|||||||||||||||||| |
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| T |
42769745 |
attcagcattgttaatcc |
42769762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 33054102 - 33054207
Alignment:
| Q |
1 |
tgctgcctcacatgcttattgtagtgcaaagcatgctgtggttggtttaactaaaaatgcagcagttgaacttggacaatttgggattagagttaattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33054102 |
tgctgcctcacatgcttattgtagtgcaaagcatgctgtggttggtttaactaaaaatgcagcagttgaacttggacaatttgggattagagttaattgt |
33054201 |
T |
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| Q |
101 |
gtgtct |
106 |
Q |
| |
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|||||| |
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| T |
33054202 |
gtgtct |
33054207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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