View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_low_14 (Length: 291)
Name: NF7226_low_14
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 30234291 - 30234551
Alignment:
| Q |
9 |
gagatggacatcactattttgcaacagatgatgctctatccgttaaattccttctagttttcttttcctcatcttaaatgagnnnnnnnnnnnncttgct |
108 |
Q |
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| T |
30234291 |
gagatggccaaccctattttgcaacagatgatgctctatccattaaattccttctagttttcatttcttcatcttaaatgagttttttcttgttcttgct |
30234390 |
T |
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| Q |
109 |
ttaaaagaaacataactcttatatcctggtctttattataccactattatcaatgacatagtattcatctaggagagaatttattgtattgacatagacc |
208 |
Q |
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| T |
30234391 |
ttaaaagaaacataactcttatatcctggtctttattataccactattatcaatgacatagtattcatctaggagagaatttattgtattgacatagacc |
30234490 |
T |
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| Q |
209 |
taacacatagcattaagactcaacaattcgttggttaaaacatatcttgttagctgaatac |
269 |
Q |
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| T |
30234491 |
taacacatagcattaagactcaacaattcgttggttaaaacatatcttgttagctgaatac |
30234551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 31700573 - 31700743
Alignment:
| Q |
25 |
ttttgcaacagatgatgctctatccgttaaattccttctagttttcttttcctcatcttaaatgagnnnnnnnnnnnncttgctttaaaagaaacataac |
124 |
Q |
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| T |
31700573 |
ttttgcaacagataatgctttgtccattaaattccttctacttttcatttcttcatcttaaatgagatctttttttt-cttgctttaaaagaaacataac |
31700671 |
T |
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| Q |
125 |
tcttatatcctggtctttattataccactattatcaatgacatagtattcatctaggagagaatttattgtatt |
198 |
Q |
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| T |
31700672 |
tcttatctcctggtcttcataataccactattatcaatg--atagtattcatctaagagagaatttattgtatt |
31700743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 31682576 - 31682675
Alignment:
| Q |
138 |
tctttattataccactattatcaatgacatagtattcatctaggagagaatttattgtattgacatagacctaacacatagcattaagactcaacaattc |
237 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||| |||||||||| ||||||||||||||||||||| |
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| T |
31682576 |
tctttattataccactattatcaatgacatagcattcatctaagagagaatttcttgtgttgacataaacctaacacacagcattaagactcaacaattc |
31682675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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