View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_low_18 (Length: 272)
Name: NF7226_low_18
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 1833581 - 1833366
Alignment:
| Q |
14 |
ttctatcatggacactaggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttcattatgatgg |
113 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1833581 |
ttctatcatggacactaggtatgcagagagcacctgggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttgattatgatgg |
1833482 |
T |
|
| Q |
114 |
tgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattggtgaaccacaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1833481 |
tgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattggtgaaccacaa |
1833382 |
T |
|
| Q |
214 |
gtatactttcaatttt |
229 |
Q |
| |
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|||||||||||||||| |
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| T |
1833381 |
gtatactttcaatttt |
1833366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 35523306 - 35523518
Alignment:
| Q |
14 |
ttctatcatggacacta-ggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttcattatgatg |
112 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| | |||||||||||||||||||| |||||||||||||| |||| |
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| T |
35523306 |
ttctatcatggacactatggtatgcaaagagcagcagggttgtatggttctctaatagtggatttaccaaagaaccaaagagagccatttcattaagatg |
35523405 |
T |
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| Q |
113 |
gtgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattggtgaaccaca |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35523406 |
gtgagttcaaactgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagatggattggtgaaccaca |
35523505 |
T |
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| Q |
213 |
agtatactttcaa |
225 |
Q |
| |
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||||| |||||| |
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| T |
35523506 |
ggtatattttcaa |
35523518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 35505910 - 35506115
Alignment:
| Q |
14 |
ttctatcatggacacta-ggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttcattatgatg |
112 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| | |||||||||||||||||||| |||||||||||||| |||| |
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| T |
35505910 |
ttctatcatggacactatggtatgcaaagagcagcagggttgtatggttctctaatagtggatttaccaaagaaccaaagagagccatttcattaagatg |
35506009 |
T |
|
| Q |
113 |
gtgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattggtgaaccaca |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35506010 |
gtgagttcaatctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagatggattggtgaaccaca |
35506109 |
T |
|
| Q |
213 |
agtata |
218 |
Q |
| |
|
||||| |
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|
| T |
35506110 |
ggtata |
35506115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 35535728 - 35535933
Alignment:
| Q |
14 |
ttctatcatggacacta-ggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttcattatgatg |
112 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| | ||||||||||||| |||||| |||||||||||||| |||| |
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| T |
35535728 |
ttctatcatggacactatggtatgcaaagagcagcagggttgtatggttctctaatagtggatttaccaaagagccaaagagagccatttcattacgatg |
35535827 |
T |
|
| Q |
113 |
gtgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattggtgaaccaca |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35535828 |
gtgagttcaatctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagatggattggtgaaccaca |
35535927 |
T |
|
| Q |
213 |
agtata |
218 |
Q |
| |
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||||| |
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|
| T |
35535928 |
ggtata |
35535933 |
T |
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