View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_low_20 (Length: 252)
Name: NF7226_low_20
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 31302311 - 31302070
Alignment:
| Q |
1 |
ttggtggatcacattgccacccttatgtaacgttactttaattttatacctcagttggttctttgaaaagaaagnnnnnnnnncaaagtaatgaagattg |
100 |
Q |
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| T |
31302311 |
ttggtggatcacattgccacccttatgtaacgttactttaattttatacctcagttggttatttgaaaagaaagaaaaaaaaacaaagtaatgaagattg |
31302212 |
T |
|
| Q |
101 |
agagtttaagaaaagaaaaggtaataatcaacaacacaagttattacatagatacatatcatcacagaaaataactgaagtactttgctacattccatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31302211 |
agagtttaagaaaagaaaaggtaataatcaacaacacaagttattacatagatacatatcatcacagaaaataactgaagtactttgctaaattccatga |
31302112 |
T |
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| Q |
201 |
ttcatttcaagcaatttaaagggataatccagactcttcatc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
31302111 |
ttcatttcaagcaatttaaagggataatccagactcttcatc |
31302070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24907208 - 24907274
Alignment:
| Q |
1 |
ttggtggatcacattgccacccttatgtaacgttactttaattttatacctcagttggttctttgaa |
67 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
24907208 |
ttggtggatcacattgccacccttatgtaacgttactttcattttatacctcggttggttatttgaa |
24907274 |
T |
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