View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7226_low_23 (Length: 224)

Name: NF7226_low_23
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7226_low_23
NF7226_low_23
[»] chr1 (5 HSPs)
chr1 (61-159)||(16401770-16401870)
chr1 (1-97)||(22350594-22350690)
chr1 (42-87)||(39061254-39061300)
chr1 (61-98)||(44822221-44822258)
chr1 (3-47)||(20453717-20453761)
[»] chr8 (2 HSPs)
chr8 (1-97)||(42265587-42265683)
chr8 (1-35)||(39694355-39694389)
[»] scaffold0308 (1 HSPs)
scaffold0308 (1-97)||(13318-13414)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-97)||(28407-28503)
[»] scaffold0116 (1 HSPs)
scaffold0116 (1-97)||(35542-35638)
[»] chr2 (9 HSPs)
chr2 (1-97)||(18388268-18388364)
chr2 (1-46)||(25142132-25142177)
chr2 (1-47)||(19358818-19358865)
chr2 (1-35)||(18390292-18390326)
chr2 (61-98)||(1383743-1383780)
chr2 (50-98)||(20006052-20006098)
chr2 (61-98)||(24884285-24884322)
chr2 (1-45)||(1383621-1383665)
chr2 (50-78)||(25584344-25584372)
[»] scaffold0007 (2 HSPs)
scaffold0007 (1-97)||(158900-158996)
scaffold0007 (42-92)||(16647-16698)
[»] chr7 (8 HSPs)
chr7 (91-156)||(15977914-15977977)
chr7 (1-47)||(13698717-13698763)
chr7 (4-45)||(33002091-33002132)
chr7 (1-35)||(13132399-13132433)
chr7 (1-35)||(15095715-15095749)
chr7 (1-47)||(15140141-15140187)
chr7 (61-98)||(14274147-14274184)
chr7 (62-98)||(47974983-47975019)
[»] chr6 (1 HSPs)
chr6 (91-156)||(17374992-17375055)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-47)||(3130-3176)
[»] chr3 (9 HSPs)
chr3 (1-35)||(19568286-19568320)
chr3 (1-47)||(42324050-42324096)
chr3 (1-47)||(22146835-22146882)
chr3 (61-98)||(6805018-6805055)
chr3 (1-46)||(11563653-11563698)
chr3 (92-156)||(17393553-17393615)
chr3 (61-98)||(24177860-24177897)
chr3 (1-45)||(9510994-9511038)
chr3 (1-45)||(9518969-9519013)
[»] scaffold0083 (1 HSPs)
scaffold0083 (4-45)||(10834-10875)
[»] scaffold0175 (1 HSPs)
scaffold0175 (1-47)||(8569-8616)
[»] scaffold0151 (1 HSPs)
scaffold0151 (4-47)||(31037-31080)
[»] scaffold0125 (1 HSPs)
scaffold0125 (52-87)||(7307-7342)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-44)||(135582-135625)
[»] chr5 (4 HSPs)
chr5 (1-47)||(21405706-21405753)
chr5 (1-35)||(21618007-21618041)
chr5 (61-98)||(17875981-17876018)
chr5 (61-98)||(30138174-30138211)
[»] chr4 (2 HSPs)
chr4 (1-47)||(9870523-9870570)
chr4 (52-87)||(14353881-14353916)
[»] scaffold0337 (1 HSPs)
scaffold0337 (42-98)||(3129-3184)
[»] scaffold0037 (2 HSPs)
scaffold0037 (1-35)||(81507-81541)
scaffold0037 (3-45)||(113048-113090)
[»] scaffold1800 (1 HSPs)
scaffold1800 (50-98)||(532-578)
[»] scaffold0149 (1 HSPs)
scaffold0149 (53-98)||(21464-21509)
[»] scaffold0139 (1 HSPs)
scaffold0139 (42-78)||(40236-40273)
[»] scaffold0026 (2 HSPs)
scaffold0026 (61-98)||(9949-9986)
scaffold0026 (62-98)||(22046-22082)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 16401870 - 16401770
Alignment:
Q  61 agaagttagggttttgaattgcaatttaattgatgaaattgcatgctcttg--gtatatatatatttggatacttgatgaattatgctcaaatgatgatt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  16401870 agaagttagggttttgaattgcaatttaattgatgaaattgcatgctcttggtgtatatatatatttggatacttgatgaattatgctcaaatgatgatt 16401771  T
Q  159 t 159  Q
    |    
T  16401770 t 16401770  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 22350690 - 22350594
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttaattgatgaa 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  22350690 agttttgggaatttgggaattagggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttgattgttgaa 22350594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 39061300 - 39061254
Alignment:
Q  42 gttgatagttt-gatgttatagaagttagggttttgaattgcaattt 87  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||||    
T  39061300 gttgatagttttgatgttatagaatttagggttttgaattgtaattt 39061254  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 44822221 - 44822258
Alignment:
Q  61 agaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  44822221 agaagttagggttttgaattgcaatttgattgttgaaa 44822258  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 20453717 - 20453761
Alignment:
Q  3 ttttgggaatttgggaattagggttagaagttgcaaatggttgat 47  Q
    ||||| |||||||||||||| |||||||||||| |||| ||||||    
T  20453717 ttttgagaatttgggaattacggttagaagttgtaaattgttgat 20453761  T

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Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 42265587 - 42265683
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttaattgatgaa 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  42265587 agttttgggaatttgggaattagggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttgattgttgaa 42265683  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39694355 - 39694389
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttg 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  39694355 agttttgggaatttgggaattagggttagacgttg 39694389  T

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Target: scaffold0308 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13414 - 13318
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttaattgatgaa 97  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  13414 agttttgggaatttgggaattagggttaaaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttgattgttgaa 13318  T

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Target: scaffold0180 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 28407 - 28503
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttaattgatgaa 97  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  28407 agttttgggaatttggaaattagggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttgattgttgaa 28503  T

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Target: scaffold0116 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 35542 - 35638
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttaattgatgaa 97  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  35542 agttttgggaatttgggaattaaggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttgattgttgaa 35638  T

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Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 18388268 - 18388364
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttaattgatgaa 97  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  18388268 agttttgggaatttgggaattatggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttgattgttgaa 18388364  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25142177 - 25142132
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttga 46  Q
    |||||||||||||||||||||||| |||||||||| || |||||||    
T  25142177 agttttgggaatttgggaattaggtttagaagttgtaattggttga 25142132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19358865 - 19358818
Alignment:
Q  1 agttttgggaatttgggaa-ttagggttagaagttgcaaatggttgat 47  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||    
T  19358865 agttttgggaatttgggaaattagggttagaagttgtaattggttgat 19358818  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18390292 - 18390326
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  18390292 agttttgggaatttgggaattaggattagaagttg 18390326  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 1383743 - 1383780
Alignment:
Q  61 agaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  1383743 agaagttagggttttgaattgcaatttgattgttgaaa 1383780  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 20006052 - 20006098
Alignment:
Q  50 tttgatgttatagaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    |||||||||||||||||||||  ||||||||||||||| |||| |||||    
T  20006052 tttgatgttatagaagttagg--tttgaattgcaatttgattgttgaaa 20006098  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 24884322 - 24884285
Alignment:
Q  61 agaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  24884322 agaagttagggttttgaattgcaatttgattgttgaaa 24884285  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1383621 - 1383665
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttg 45  Q
    |||||||| ||||||||||||||| |||||||||| || ||||||    
T  1383621 agttttggaaatttgggaattaggtttagaagttgtaattggttg 1383665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 25584344 - 25584372
Alignment:
Q  50 tttgatgttatagaagttagggttttgaa 78  Q
    |||||||||||||||||||||||||||||    
T  25584344 tttgatgttatagaagttagggttttgaa 25584372  T

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Target: scaffold0007 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 158900 - 158996
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgatagtttgatgttatagaagttagggttttgaattgcaatttaattgatgaa 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||||||| ||||| |||| ||||    
T  158900 agttttgggaatttgggaattagggttagaagttgcaaatggttgataatttgatgttatagaaattgggattttgaattgaaatttgattgttgaa 158996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 16647 - 16698
Alignment:
Q  42 gttgatagttt-gatgttatagaagttagggttttgaattgcaatttaattg 92  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||| ||||    
T  16647 gttgatagttttgatgctatagaagttagggttttaaattgcaatttgattg 16698  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 15977914 - 15977977
Alignment:
Q  91 tgatgaaattgcatgctcttggtatatatatatttggatacttgatgaattatgctcaaatgatga 156  Q
    ||||||||||||||| || |||| |||||||||  |||||||||||||||||| ||||||||||||    
T  15977914 tgatgaaattgcatgttcatggtgtatatatat--ggatacttgatgaattatactcaaatgatga 15977977  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13698717 - 13698763
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgat 47  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||    
T  13698717 agttttggaaatttgggaattagggttagaagttgtaattggttgat 13698763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 33002132 - 33002091
Alignment:
Q  4 tttgggaatttgggaattagggttagaagttgcaaatggttg 45  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  33002132 tttgggaatttgggaattagggttagaagttgtaattggttg 33002091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13132399 - 13132433
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  13132399 agttttgggaatttgggaattaggtttagaagttg 13132433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15095715 - 15095749
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  15095715 agttttgggaatttgggaattaggtttagaagttg 15095749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15140187 - 15140141
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgat 47  Q
    |||||||||||||||||||||||| ||| |||||| || ||||||||    
T  15140187 agttttgggaatttgggaattaggtttaaaagttgtaattggttgat 15140141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 14274184 - 14274147
Alignment:
Q  61 agaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  14274184 agaagttagggttttgaattgcaatttgattgttgaaa 14274147  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 47974983 - 47975019
Alignment:
Q  62 gaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    |||||||||||||||||||||||||| |||| |||||    
T  47974983 gaagttagggttttgaattgcaatttgattgttgaaa 47975019  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 17374992 - 17375055
Alignment:
Q  91 tgatgaaattgcatgctcttggtatatatatatttggatacttgatgaattatgctcaaatgatga 156  Q
    |||||||||| |||| || |||| |||||||||  |||||||||||||||||||||||||||||||    
T  17374992 tgatgaaattacatgttcatggtgtatatatat--ggatacttgatgaattatgctcaaatgatga 17375055  T

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Target: scaffold0028 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3130 - 3176
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgat 47  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||    
T  3130 agttttgggaatttaggaattagggttagaagttgtaattggttgat 3176  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19568286 - 19568320
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19568286 agttttgggaatttgggaattagggttagaagttg 19568320  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42324050 - 42324096
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttgat 47  Q
    |||||||||||||||| |||||||||||||||||| || ||||||||    
T  42324050 agttttgggaatttggaaattagggttagaagttgtaattggttgat 42324096  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22146835 - 22146882
Alignment:
Q  1 agttttgggaatttgggaa-ttagggttagaagttgcaaatggttgat 47  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||    
T  22146835 agttttgggaatttgggaaattagggttagaagttgtaattggttgat 22146882  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 6805018 - 6805055
Alignment:
Q  61 agaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  6805018 agaagttagggttttgaattgcaatttgattgttgaaa 6805055  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11563698 - 11563653
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttga 46  Q
    |||||||||||||||||||||||| ||| |||||| || |||||||    
T  11563698 agttttgggaatttgggaattaggtttaaaagttgtaattggttga 11563653  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 17393615 - 17393553
Alignment:
Q  92 gatgaaattgcatgctcttggtatatatatatttggatacttgatgaattatgctcaaatgatga 156  Q
    |||||||||||||| || || | |||||||||  |||||||||||||||||||| | ||||||||    
T  17393615 gatgaaattgcatgttcatgctgtatatatat--ggatacttgatgaattatgcacgaatgatga 17393553  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 24177860 - 24177897
Alignment:
Q  61 agaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  24177860 agaagttagggttttgaattgcaatttgattgttgaaa 24177897  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9510994 - 9511038
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttg 45  Q
    ||||||||||||||| |||||||| |||||||||| || ||||||    
T  9510994 agttttgggaatttgagaattaggtttagaagttgtaattggttg 9511038  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9518969 - 9519013
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggttg 45  Q
    ||||||||||||||| |||||||| |||||||||| || ||||||    
T  9518969 agttttgggaatttgagaattaggtttagaagttgtaattggttg 9519013  T

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Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 10834 - 10875
Alignment:
Q  4 tttgggaatttgggaattagggttagaagttgcaaatggttg 45  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  10834 tttgggaatttgggaattagggttagaagttgtaattggttg 10875  T

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Target: scaffold0175 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8616 - 8569
Alignment:
Q  1 agttttgggaatttgggaa-ttagggttagaagttgcaaatggttgat 47  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||    
T  8616 agttttgggaatttgggaaattagggttagaagttgtaattggttgat 8569  T

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Target: scaffold0151 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 31080 - 31037
Alignment:
Q  4 tttgggaatttgggaattagggttagaagttgcaaatggttgat 47  Q
    ||||||||||||||||||||||||| |||||| |||| ||||||    
T  31080 tttgggaatttgggaattagggttaaaagttgtaaattgttgat 31037  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 7307 - 7342
Alignment:
Q  52 tgatgttatagaagttagggttttgaattgcaattt 87  Q
    |||||||| |||||||||||||||||||||||||||    
T  7307 tgatgttaaagaagttagggttttgaattgcaattt 7342  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 135582 - 135625
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttgcaaatggtt 44  Q
    ||||||||||||||||||||||| ||||||||||| || |||||    
T  135582 agttttgggaatttgggaattagagttagaagttgaaattggtt 135625  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21405706 - 21405753
Alignment:
Q  1 agttttgggaatttgggaa-ttagggttagaagttgcaaatggttgat 47  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||    
T  21405706 agttttgggaatttgggaaattagggttagaagttgtaattggttgat 21405753  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21618007 - 21618041
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttg 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  21618007 agttttgggaatttgagaattagggttagaagttg 21618041  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 17876018 - 17875981
Alignment:
Q  61 agaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  17876018 agaagttagggttttgaattgcaatttgattgttgaaa 17875981  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 30138174 - 30138211
Alignment:
Q  61 agaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  30138174 agaagttagggttttgaattgcaatttgattgttgaaa 30138211  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9870523 - 9870570
Alignment:
Q  1 agttttgggaatttgggaa-ttagggttagaagttgcaaatggttgat 47  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||    
T  9870523 agttttgggaatttgggaaattagggttagaagttgtaattggttgat 9870570  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 14353881 - 14353916
Alignment:
Q  52 tgatgttatagaagttagggttttgaattgcaattt 87  Q
    |||||||| |||||||||||||||||||||||||||    
T  14353881 tgatgttaaagaagttagggttttgaattgcaattt 14353916  T

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Target: scaffold0337 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 3184 - 3129
Alignment:
Q  42 gttgatagttt-gatgttatagaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    ||||||||||| ||||||||||||||||||  ||| |||||||||||||||| |||||    
T  3184 gttgatagttttgatgttatagaagttagg--tttaaattgcaatttaattgttgaaa 3129  T

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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 81541 - 81507
Alignment:
Q  1 agttttgggaatttgggaattagggttagaagttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  81541 agttttgggaatttgggaattaggtttagaagttg 81507  T

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Target: scaffold0037; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 113048 - 113090
Alignment:
Q  3 ttttgggaatttgggaattagggttagaagttgcaaatggttg 45  Q
    |||||||||||||||||||||| |||||||||| || ||||||    
T  113048 ttttgggaatttgggaattaggtttagaagttgtaattggttg 113090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1800 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1800
Description:

Target: scaffold1800; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 578 - 532
Alignment:
Q  50 tttgatgttatagaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    |||||||||||||||||||||  ||||||||||||||| |||| |||||    
T  578 tttgatgttatagaagttagg--tttgaattgcaatttgattgttgaaa 532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 21509 - 21464
Alignment:
Q  53 gatgttatagaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    |||||||  |||||||||||||||||||||||||| |||| |||||    
T  21509 gatgttaatgaagttagggttttgaattgcaatttcattgttgaaa 21464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 40236 - 40273
Alignment:
Q  42 gttgatagttt-gatgttatagaagttagggttttgaa 78  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  40236 gttgatagttttgatgttatagaagttagggttttgaa 40273  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 9986 - 9949
Alignment:
Q  61 agaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  9986 agaagttagggttttgaattgcaatttgattgttgaaa 9949  T

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Target: scaffold0026; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 22082 - 22046
Alignment:
Q  62 gaagttagggttttgaattgcaatttaattgatgaaa 98  Q
    |||||||||||||||||||||||||| |||| |||||    
T  22082 gaagttagggttttgaattgcaatttgattgttgaaa 22046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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