View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_low_25 (Length: 211)
Name: NF7226_low_25
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 524294 - 524465
Alignment:
| Q |
16 |
catcatgtactaagaagtgannnnnnntgatgatttgaatcattttcaatttcagcttctggttcaacaacttgtgtcgcactacaatcattcacttttc |
115 |
Q |
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| T |
524294 |
catcatgtactaagaagtgagggggg-tgataatttgactcattttcaatttcagcttctggttcaacaacttgtgtcgcactacaatccttcacttttc |
524392 |
T |
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| Q |
116 |
tctgctcttcatcagtcatcataagttcaggttcaacaaattcaaaagcaggcacatccgacctcatttcttc |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
524393 |
tctgctcttcatcagtcatcataagttcaggttcaacagattcaaaagcaggcacatccgacctcatttcttc |
524465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 22856807 - 22856640
Alignment:
| Q |
16 |
catcatgtactaagaagtgannnnnnntgatgatttgaatcattttcaatttcagcttctggttcaacaacttgtgtcgcactacaatcattcacttttc |
115 |
Q |
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| T |
22856807 |
catcatgtactaagaagtgagt-----tgatgatttgacttattttcaatttcagcttctagttcaacaacttgtgtcgcactacaatcattcacttttc |
22856713 |
T |
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| Q |
116 |
tctgctcttcatcagtcatcataagttcaggttcaacaaattcaaaagcaggcacatccgacctcatttcttc |
188 |
Q |
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| T |
22856712 |
tctgctcttcatcagtcatcataaggtcaggttcaacagattcaaaagtatgcacagccaacctcacttcttc |
22856640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 10672849 - 10672989
Alignment:
| Q |
43 |
tgatgatttgaatcattttcaatttcagcttctggttcaacaacttgtgtcgcactacaatcattcacttttctctgctcttcatcagtcatcataagtt |
142 |
Q |
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| T |
10672849 |
tgatgatttgacttattttcaatttcaacttttggttaaacaacttgtgtcgcacaacaatcattcctttttctctgctcttcatcagtcatcataagat |
10672948 |
T |
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| Q |
143 |
caggttcaacaaattcaaaagcaggcacatccgacctcatt |
183 |
Q |
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| T |
10672949 |
ttggttcaacagattcacaaataggcccatctgacctcatt |
10672989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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