View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_low_3 (Length: 498)
Name: NF7226_low_3
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 194 - 482
Target Start/End: Original strand, 39686491 - 39686779
Alignment:
| Q |
194 |
aattctggcaacggtttaatgggcttaaacgaatcttaatcattgtaatatgacgacacagtaatgactgaagaagcacttaaattatgaatagagacat |
293 |
Q |
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| T |
39686491 |
aattctggcaacggtttaatgggcttaaacgaatcttaatcattgtaatatgacgacacaggaatgactgaagaagcacttaaattatgaatagagacat |
39686590 |
T |
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| Q |
294 |
ttgtccgattagtgacgtcactcacccaatcagcatcctttcacaaatatcttcttttaatcttcgaatcctaaccgtcggatcaagcaggaccatgcac |
393 |
Q |
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| T |
39686591 |
ttgtccgattagtgacgtcactcacccaatcagcatcctttcacaaatatcttcttttaatcttcgaatcctaaccgtcggatcaagcaggaccatgcac |
39686690 |
T |
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| Q |
394 |
aacaagttgtatcacggcacggcattagtacgacgaaagacttggtcaatgtttgtcttggctgtcaaaatatacatgtacggatgtcc |
482 |
Q |
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| T |
39686691 |
aacaagttgtatcacggcacggcattagtacgacgaaagacttggtcaatgtttgtcttggctgtcaaaatatacatgtacggatgtcc |
39686779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 39686321 - 39686421
Alignment:
| Q |
20 |
gttcaaacctcagacaacctcacttattcaccttcaaaaatagaattctaatatcatcatgctacttcatnnnnnnngaatttttatcctgccatcatgc |
119 |
Q |
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|||| |||||||||||| | |||||||||||||||||||| ||||||||| |||||||| ||||||||| ||| ||||||||||||||||||| |
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| T |
39686321 |
gttcgaacctcagacaatcccacttattcaccttcaaaaagagaattcta--atcatcatactacttcataaaaatagaa-ttttatcctgccatcatgc |
39686417 |
T |
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| Q |
120 |
ataa |
123 |
Q |
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| T |
39686418 |
ataa |
39686421 |
T |
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