View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7226_low_4 (Length: 487)
Name: NF7226_low_4
Description: NF7226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7226_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 30678609 - 30679085
Alignment:
| Q |
1 |
tctgtcgctaccagacagatcaaaatccaacagttcaactgttttgtgaaaagcacaggttgttttttgtcgtgaggaatatcacctctcataaacttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
30678609 |
tctgtcgctaccagacagatcaaaatccaacagttcaactgttttgtgaaaagcacaggttgttttttgtcgtgaggaatagcacctctcataaacttga |
30678708 |
T |
|
| Q |
101 |
tacgttaatatttctctttggtacaatttaatttagttgtcgctattttgcaggtcaaaatcatgattgaatggtgaaccggactagacaaggtcacaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30678709 |
tacgttaatatttctctttggtacaatttaatttagttgtcgctattttgcaggtcaaaatcatgattgaatggtgaaccggactagacaaggtc---ac |
30678805 |
T |
|
| Q |
201 |
aaggctattcatgcacggttatgtttttacgtttgtcttttttcttgtaccaaaattgtatcaggctttctattttcagatctcgtgctccctagtcatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30678806 |
aaggctattcatgcacggttatgtttttacgtttgtcttttttcttgtaccaaaattgtatcaggctttctattttcaaatctcgtgctccctagtcatc |
30678905 |
T |
|
| Q |
301 |
gtgttg-------caacaactaagaccatacattttttctcataagccaaaaagatgatatattnnnnnnnnnnnnnnnntt--agagtgtttatggaac |
391 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||||||||| |
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| T |
30678906 |
gtgttgcatgtgccaacaactaagaccataca-tttttctcataagccaaacagatgatatattaaaaaaaaaaaaaaatctaaagagtgtttatggaac |
30679004 |
T |
|
| Q |
392 |
actactatataaagattctaaattaagagtgttttagaacatttgttagtattttcttattaaaaatcaataagagtattg |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30679005 |
actactatataaagattctaaattaagagtgttttagaacatttgttagtattttcttattaaaaatcaataagagtattg |
30679085 |
T |
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