View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7227_high_2 (Length: 510)
Name: NF7227_high_2
Description: NF7227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7227_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 24 - 506
Target Start/End: Complemental strand, 17932418 - 17931936
Alignment:
| Q |
24 |
aatacataatttttagtggactacaatcaataaagtaatcactcatcatttttatgcagtgaagcgggataatgaaaatcataataacgaatgtcaacat |
123 |
Q |
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| T |
17932418 |
aatacataatttttagtggactacaatcaataaagtaatcattcatcatttttatgcagtgaagcgggataatgaaaatcataataaggaatgtcaacat |
17932319 |
T |
|
| Q |
124 |
gttgcaaggcgattaaggtcattcaagactaaaaaacataggcaacagttgatgacagagtgcgtaagaaattctgctgatacaagatcgcaagctagtg |
223 |
Q |
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| T |
17932318 |
gttgcaaggcgattaaggtcattcaagactaaaaaacataggcaacagttgacgacagagtgcgtaagaaattctgctgatacaagatcgcaagctagtg |
17932219 |
T |
|
| Q |
224 |
gaactatgctaaaagataagaatctaataacatgtcaacaagagctacctcaaacctatggatgtaccgaaaatttagaagcaaactttggcacaaataa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17932218 |
gaactatgctaaaagataagaatctaataacatgtcaacaagagctacctcaaacctatggatgtaccgaaaatttagaagcaaactttggcacaaataa |
17932119 |
T |
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| Q |
324 |
acttctagggaattacggatcaaatgaatcatcaggggtcagatacaaatctcttcagcatattccaagtggacttccggtgcaaaagaatgtacttttg |
423 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17932118 |
acttgaagggaattacggatcaaatgaatcgtcaggggtcagatacaaatctcttcagcatattccaagtggacttccggtgcaaaagaatgtacttttg |
17932019 |
T |
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| Q |
424 |
ttcactggattaccaaattacacattccatcactatgatccaaatatgggatggacgttgtacatgcatgatgtccatctcat |
506 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||| |
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| T |
17932018 |
ttcactggattaccaaattacacattccatcaatatgatccaaatatgggatggacgttgtacatgcatcatgtgcagctcat |
17931936 |
T |
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