View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7227_high_6 (Length: 276)
Name: NF7227_high_6
Description: NF7227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7227_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 57 - 255
Target Start/End: Complemental strand, 25276422 - 25276224
Alignment:
| Q |
57 |
tgttgaacttaagataccgatacattaacatttctagtaatttaaatatacctgtcaaacattgacacgtgaggtgtgggatattggaaaaacctttgat |
156 |
Q |
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| T |
25276422 |
tgttgaacataagatactgatacattaacatttctagtaatttaaatatacctgtcaaacactgacacgtgaggtgtgggatattggaaaaacctttgat |
25276323 |
T |
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| Q |
157 |
atgaagtgtcagttctatattcttttcgaaattacgggagccattggcactccgcttattattgacgccgcaactcagaaacgcacatttggccattac |
255 |
Q |
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| T |
25276322 |
atgaagtgtcagttctatattcttttcgaaattacgggagccattggcacccggcttattattgacgccgaaactcagaaacgcacatttggccattac |
25276224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 25276572 - 25276531
Alignment:
| Q |
5 |
tatagagaaaaacagataagtgcgtcacatatccatgtaatg |
46 |
Q |
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| T |
25276572 |
tatagagaaaaacagttaagtgtgtcacatatccatgtaatg |
25276531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 17705181 - 17705235
Alignment:
| Q |
200 |
ttggcactccgcttattattgacgccgcaactcagaaacgcacatttggccatta |
254 |
Q |
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| T |
17705181 |
ttggtactcctctcatcattgatgccgcaactcagaaacgcacctttggccatta |
17705235 |
T |
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