View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7227_low_3 (Length: 409)

Name: NF7227_low_3
Description: NF7227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7227_low_3
NF7227_low_3
[»] chr7 (3 HSPs)
chr7 (1-170)||(12489708-12489877)
chr7 (232-372)||(12489506-12489646)
chr7 (271-352)||(43016430-43016510)
[»] chr3 (1 HSPs)
chr3 (232-352)||(35495300-35495422)
[»] chr2 (5 HSPs)
chr2 (232-352)||(11361754-11361876)
chr2 (1-111)||(11361513-11361627)
chr2 (288-323)||(5568381-5568416)
chr2 (311-353)||(17641379-17641421)
chr2 (288-324)||(6408348-6408384)
[»] chr1 (4 HSPs)
chr1 (1-122)||(31123455-31123580)
chr1 (232-352)||(31123246-31123368)
chr1 (294-353)||(29321937-29321996)
chr1 (272-351)||(29500387-29500464)
[»] chr4 (2 HSPs)
chr4 (232-352)||(23112122-23112241)
chr4 (288-351)||(32179285-32179343)
[»] chr8 (2 HSPs)
chr8 (253-352)||(40499433-40499535)
chr8 (248-300)||(39037401-39037456)
[»] chr6 (1 HSPs)
chr6 (272-351)||(14526853-14526933)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 12489877 - 12489708
Alignment:
Q  1 tcagatctagaatacaaaccaaaacacatggaggtggtaacaaacgaagacgatgaagaagaaagagttgtgattcggttgtggtagttgatggaggtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12489877 tcagatctagaatacaaaccaaaacacatggaggtggtaacaaacgaagacgatgaagaagaaggagttgtgattcggttgtggtagttgatggaggtga 12489778  T
Q  101 caaaacgatggcgatggagatgaagttgcaattcggtatagccgacggcgtcgacggcaacagtgaggcc 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12489777 caaaacgatggcgatggagatgaagttgcaattcggtatagccgacggcgtcgacggcaacagtgaggcc 12489708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 232 - 372
Target Start/End: Complemental strand, 12489646 - 12489506
Alignment:
Q  232 ttgtgtagttgtgagtgaaattaccaaactacctattgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaaag 331  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  12489646 ttgtgtggttgtgagtgaaattaccaaactacctattgcatgaaattaccaaactacccctgccacatcagcagtggtacaaaggggtgtatattaaaag 12489547  T
Q  332 tggtctatgtatctttttccttcaacaaacttccaccttac 372  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12489546 tggtctatgtatctttttccttcaacaaacttccaccttac 12489506  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 43016510 - 43016430
Alignment:
Q  271 atgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaaagtggtctatgtatctttttcct 352  Q
    ||||||||| ||| |||||| |||||||||||||| ||||||||| || ||| |  ||  ||||||||||||||||||||||    
T  43016510 atgaaattagcaatctacccctgccacatcagcagtggtacaaagtgg-gtacacaaatggtggtctatgtatctttttcct 43016430  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 352
Target Start/End: Complemental strand, 35495422 - 35495300
Alignment:
Q  232 ttgtgtagttgtgagtgaaattaccaaactacct--attgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa 329  Q
    |||||| ||||| ||||||| |||||||||||||  ||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||| |     
T  35495422 ttgtgtggttgtaagtgaaactaccaaactacctctattgcatgaaattaccaaactacccctaccacatcagcagtggtgcaaaggggtgtatattgag 35495323  T
Q  330 agtggtctatgtatctttttcct 352  Q
    |||||||| ||||||||||||||    
T  35495322 agtggtctctgtatctttttcct 35495300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 352
Target Start/End: Original strand, 11361754 - 11361876
Alignment:
Q  232 ttgtgtagttgtgagtgaaattaccaaactacc--tattgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa 329  Q
    |||||| ||||||||||||| || |||||||||  |||||| ||||| |||||||||  || |||||||||||||| |||| ||||||||| ||||||||    
T  11361754 ttgtgtggttgtgagtgaaactatcaaactacccatattgcgtgaaactaccaaactgtccctgccacatcagcagtggtataaaggggtggatattaaa 11361853  T
Q  330 agtggtctatgtatctttttcct 352  Q
    |||||||||||||||||||||||    
T  11361854 agtggtctatgtatctttttcct 11361876  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 11361513 - 11361627
Alignment:
Q  1 tcagatctagaatacaaaccaaaacacatggaggtggt----aacaaacgaagacgatgaagaagaaagagttgtgattcggttgtggtagttgatggag 96  Q
    ||||||||||||| ||||||||||| ||||||||||||     |||||||| ||||||||| ||||| ||||| |||||||||||||| |||||||||||    
T  11361513 tcagatctagaatgcaaaccaaaacgcatggaggtggtgatggacaaacgacgacgatgaaaaagaaggagttatgattcggttgtgggagttgatggag 11361612  T
Q  97 gtgacaaaacgatgg 111  Q
    |||||| ||||||||    
T  11361613 gtgacagaacgatgg 11361627  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 323
Target Start/End: Original strand, 5568381 - 5568416
Alignment:
Q  288 cccttgccacatcagcagcggtacaaaggggtgtat 323  Q
    |||||||||||||||||| |||||||||||||||||    
T  5568381 cccttgccacatcagcagtggtacaaaggggtgtat 5568416  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 17641421 - 17641379
Alignment:
Q  311 caaaggggtgtatattaaaagtggtctatgtatctttttcctt 353  Q
    ||||||||||||||  || ||||||||||||||||||||||||    
T  17641421 caaaggggtgtatagaaagagtggtctatgtatctttttcctt 17641379  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 6408348 - 6408384
Alignment:
Q  288 cccttgccacatcagcagcggtacaaaggggtgtata 324  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  6408348 cccttgccacatgagcagtggtacaaaggggtgtata 6408384  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 31123580 - 31123455
Alignment:
Q  1 tcagatctagaatacaaaccaaaacacatggaggtggtaa----caaacgaagacgatgaagaagaaagagttgtgattcggttgtggtagttgatggag 96  Q
    ||||||||||||| ||||||||||  |||||||||||| |    ||||||| |  ||||||||||||  | ||||||||||||||||| |||||||||||    
T  31123580 tcagatctagaatgcaaaccaaaatgcatggaggtggtgatggacaaacgacggtgatgaagaagaagaatttgtgattcggttgtgggagttgatggag 31123481  T
Q  97 gtgacaaaacgatggcgatggagatg 122  Q
    |||||| |||||||||||||||||||    
T  31123480 gtgacagaacgatggcgatggagatg 31123455  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 352
Target Start/End: Complemental strand, 31123368 - 31123246
Alignment:
Q  232 ttgtgtagttgtgagtgaaattaccaaactacc--tattgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa 329  Q
    |||||| ||||||| ||||| ||||||||||||  |||||  ||||||||||||||||||  |||||||||||||| | |||||||| ||||| |   |     
T  31123368 ttgtgtggttgtgaatgaaactaccaaactacccctattgtgtgaaattaccaaactacctctgccacatcagcagtgatacaaaggagtgtaaacatag 31123269  T
Q  330 agtggtctatgtatctttttcct 352  Q
    |||||||||  ||||||||||||    
T  31123268 agtggtctacctatctttttcct 31123246  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 29321996 - 29321937
Alignment:
Q  294 ccacatcagcagcggtacaaaggggtgtatattaaaagtggtctatgtatctttttcctt 353  Q
    |||||||||||| |||| |||||||||||||  || |||||| | |||||||||||||||    
T  29321996 ccacatcagcagtggtagaaaggggtgtatagaaagagtggtttgtgtatctttttcctt 29321937  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 29500387 - 29500464
Alignment:
Q  272 tgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa-agtggtctatgtatctttttcc 351  Q
    ||||||||||||||||||| |||||||||||    ||||||||| | |||||   ||| ||||||||||||||||||||||    
T  29500387 tgaaattaccaaactacccctgccacatcagt---ggtacaaagagatgtatggaaaagagtggtctatgtatctttttcc 29500464  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 232 - 352
Target Start/End: Complemental strand, 23112241 - 23112122
Alignment:
Q  232 ttgtgtagttgtgagtgaaattaccaaactacct--attgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa 329  Q
    |||||| ||||| ||||||| |||||||||||||  ||||| |||||||| ||||| |||| | |||||||||||| ||||||||||   ||||||| |     
T  23112241 ttgtgtggttgtaagtgaaactaccaaactacctctattgcgtgaaattatcaaaccacccctaccacatcagcagtggtacaaagg---gtatattgag 23112145  T
Q  330 agtggtctatgtatctttttcct 352  Q
    |||||||||||||||||||||||    
T  23112144 agtggtctatgtatctttttcct 23112122  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 32179285 - 32179343
Alignment:
Q  288 cccttgccacatcagcagcggtacaaaggggtgtatattaaaagtggtctatgtatctttttcc 351  Q
    |||||||||||||||||| ||||||||||||||     ||  ||||||||||||||||||||||    
T  32179285 cccttgccacatcagcagtggtacaaaggggtg-----tacgagtggtctatgtatctttttcc 32179343  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 40499535 - 40499433
Alignment:
Q  253 taccaaacta--cctattgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa-agtggtctatgtatcttttt 349  Q
    ||||||||||  ||||| || |||||||| |||||||||| |||||||||||||| ||| |||||||| |||||  ||| ||||||||||||||||||||    
T  40499535 taccaaactatccctatcgcgtgaaattatcaaactacccctgccacatcagcagtggtgcaaaggggcgtatagaaaagagtggtctatgtatcttttt 40499436  T
Q  350 cct 352  Q
    |||    
T  40499435 cct 40499433  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 39037401 - 39037456
Alignment:
Q  248 gaaattaccaaactacc---tattgcatgaaattaccaaactacccttgccacatc 300  Q
    |||| ||||||||||||   ||| || |||||||||||||||||||||||||||||    
T  39037401 gaaactaccaaactaccccttatcgcgtgaaattaccaaactacccttgccacatc 39037456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 14526853 - 14526933
Alignment:
Q  272 tgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa-agtggtctatgtatctttttcc 351  Q
    ||||||||||||||||||| ||  |||||| ||  ||||||||||||||||||  ||| ||||||||||||||||||||||    
T  14526853 tgaaattaccaaactacccctgtaacatcaacactggtacaaaggggtgtatagaaaagagtggtctatgtatctttttcc 14526933  T

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