View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7227_low_8 (Length: 262)

Name: NF7227_low_8
Description: NF7227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7227_low_8
NF7227_low_8
[»] chr6 (10 HSPs)
chr6 (1-262)||(176241-176502)
chr6 (21-142)||(1470926-1471047)
chr6 (21-142)||(1459544-1459665)
chr6 (32-159)||(7564737-7564864)
chr6 (30-157)||(1442096-1442223)
chr6 (39-148)||(370782-370891)
chr6 (22-147)||(1453838-1453963)
chr6 (22-147)||(1465530-1465655)
chr6 (93-142)||(9819832-9819881)
chr6 (94-142)||(9703889-9703937)
[»] chr4 (1 HSPs)
chr4 (54-155)||(55419742-55419843)
[»] chr7 (1 HSPs)
chr7 (28-147)||(3926993-3927112)
[»] chr3 (3 HSPs)
chr3 (105-153)||(2442050-2442098)
chr3 (98-155)||(4142124-4142181)
chr3 (98-150)||(4157939-4157991)
[»] chr2 (3 HSPs)
chr2 (105-148)||(6538845-6538888)
chr2 (98-147)||(7160752-7160801)
chr2 (98-147)||(7168688-7168737)
[»] scaffold0044 (1 HSPs)
scaffold0044 (88-142)||(89137-89191)
[»] chr5 (2 HSPs)
chr5 (105-150)||(23766857-23766902)
chr5 (105-150)||(23816705-23816750)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 176241 - 176502
Alignment:
Q  1 tcccagcccgattatggtctacctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176241 tcccagcccgattatggtctacctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatattt 176340  T
Q  101 ggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactcttccattcgccgaattcgttggtcttgatggcgtctgcattactcggct 200  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  176341 ggcgtatgaatgattatggaaataaagattcttggactaaattgttcactcttccatttgccgaattcgttggtcttgatggcgtctgcattactcggct 176440  T
Q  201 ttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttaca 262  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  176441 ttatatttctgaggaggaccaccaagtgttcgtgtacttcatcaataaggtatatgtttaca 176502  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 1471047 - 1470926
Alignment:
Q  21 acctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatgga 120  Q
    |||||||| |||||| |||||||||||||||||||||| | ||||| |||||||||| ||| || |||||||||||||||||  |||||| |||||||||    
T  1471047 acctctgcgtaactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatcttttttggatatttgggttatgaaagattatgga 1470948  T
Q  121 aataaagattcttggactaaat 142  Q
    ||||||||||||||| ||||||    
T  1470947 aataaagattcttggtctaaat 1470926  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 1459665 - 1459544
Alignment:
Q  21 acctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatgga 120  Q
    ||||||||||||||| ||||||||||||| |||||||| | |||||||||||||||| ||  || |||||||||||||||||  |||||| |||| ||||    
T  1459665 acctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttgga 1459566  T
Q  121 aataaagattcttggactaaat 142  Q
    |||||||| |||||||||||||    
T  1459565 aataaagaatcttggactaaat 1459544  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 7564864 - 7564737
Alignment:
Q  32 acttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattc 131  Q
    |||| ||||| ||||||| |||||||||| |||| ||||||||||||||   |||||||||| ||||||||  |||||| ||||||||||| || |||||    
T  7564864 actttagcttaggggtttgtagggattgcttatgggtccttgctcacactacaacttttttgaatatttgggttatgaaggattatggaaacaaggattc 7564765  T
Q  132 ttggactaaatcgttcactcttccattc 159  Q
    ||||||||||| ||||| | ||||||||    
T  7564764 ttggactaaattgttcagtgttccattc 7564737  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 1442223 - 1442096
Alignment:
Q  30 taacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagat 129  Q
    |||||| |||||||||||||| |  |||||| ||||| |||||||||| | || |||| |||||||||  |||  |||||| |||||||||| |||||||    
T  1442223 taacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggaactattttggatacatgggttatgaaggattatggaattaaagat 1442124  T
Q  130 tcttggactaaatcgttcactcttccat 157  Q
    ||||||||||||| ||||||| ||||||    
T  1442123 tcttggactaaattgttcactgttccat 1442096  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 370891 - 370782
Alignment:
Q  39 cttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggact 138  Q
    ||||| |||||||||||||||| ||||| |||||||||| ||  |||||||| |||   |||||  ||||||  ||||||||||||||||||||||||||    
T  370891 cttggaggtttctagggattgcttatgcatccttgctcagactaaaacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggact 370792  T
Q  139 aaatcgttca 148  Q
    |||| |||||    
T  370791 aaattgttca 370782  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 1453963 - 1453838
Alignment:
Q  22 cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa 121  Q
    ||||||||| |||| |||||||| || |||||||||||| ||||| ||||||||||| |  |    | ||||||||| |||  ||||||  |||||||||    
T  1453963 cctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaa 1453864  T
Q  122 ataaagattcttggactaaatcgttc 147  Q
    ||||||| ||||||| ||||| ||||    
T  1453863 ataaagactcttggaataaattgttc 1453838  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 1465655 - 1465530
Alignment:
Q  22 cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa 121  Q
    ||||||||| |||| |||||||| || |||||||||||| ||||| ||||||||||| |  |    | ||||||||| |||  ||||||  |||||||||    
T  1465655 cctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaa 1465556  T
Q  122 ataaagattcttggactaaatcgttc 147  Q
    ||||||| ||||||| ||||| ||||    
T  1465555 ataaagactcttggaataaattgttc 1465530  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 9819881 - 9819832
Alignment:
Q  93 ggatatttggcgtatgaacgattatggaaataaagattcttggactaaat 142  Q
    ||||||||||| |||||| || |||||||||| ||| |||||||||||||    
T  9819881 ggatatttggcttatgaaggaatatggaaatagagactcttggactaaat 9819832  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 9703937 - 9703889
Alignment:
Q  94 gatatttggcgtatgaacgattatggaaataaagattcttggactaaat 142  Q
    |||||||||| |||||| || |||||||||| ||||| |||||||||||    
T  9703937 gatatttggcttatgaaggaatatggaaatagagatttttggactaaat 9703889  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 55419742 - 55419843
Alignment:
Q  54 ggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactctt 153  Q
    ||||||| |||||||| ||||||||||| |  ||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||| ||| ||| ||    
T  55419742 ggattgcttatgcgtcgttgctcacaccaattcttttttggatatctggcttatgaaggtttatggaaataaagattcttggactaaattgtttactatt 55419841  T
Q  154 cc 155  Q
    ||    
T  55419842 cc 55419843  T

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Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 3926993 - 3927112
Alignment:
Q  28 cataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaag 127  Q
    |||| ||||| ||| |||||||||| ||||||| | || ||||||| | |||| |||||||| |||| |||||||  |||||| |||||||||||||||     
T  3926993 catatcttcaccttaggggtttctaaggattgcttgtgtgtccttgtttacactgaaactttgttgggtatttgggttatgaaggattatggaaataaaa 3927092  T
Q  128 attcttggactaaatcgttc 147  Q
    ||||||||||||||| ||||    
T  3927093 attcttggactaaattgttc 3927112  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 2442050 - 2442098
Alignment:
Q  105 tatgaacgattatggaaataaagattcttggactaaatcgttcactctt 153  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||||    
T  2442050 tatgaaggagtatggaaataaagattcttggactaaattgttcactctt 2442098  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 4142181 - 4142124
Alignment:
Q  98 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactcttcc 155  Q
    |||||| |||||| || |||||||||||||| ||||||||||||| ||||||| ||||    
T  4142181 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 4142124  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 4157991 - 4157939
Alignment:
Q  98 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcact 150  Q
    |||||| |||||| || |||||||||||||| ||||||||||||| |||||||    
T  4157991 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4157939  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 6538845 - 6538888
Alignment:
Q  105 tatgaacgattatggaaataaagattcttggactaaatcgttca 148  Q
    |||||| || |||||||||||||||||||||||||||| |||||    
T  6538845 tatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 7160801 - 7160752
Alignment:
Q  98 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttc 147  Q
    |||||| |||||| || ||||||||||| |||||||||||||||| ||||    
T  7160801 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 7168737 - 7168688
Alignment:
Q  98 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttc 147  Q
    |||||| |||||| || ||||||||||| |||||||||||||||| ||||    
T  7168737 tttggcttatgaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 89137 - 89191
Alignment:
Q  88 tttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaat 142  Q
    ||||| |||||||||  |||||| || |||||||||||||| |||||||||||||    
T  89137 ttttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaat 89191  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 23766902 - 23766857
Alignment:
Q  105 tatgaacgattatggaaataaagattcttggactaaatcgttcact 150  Q
    |||||| || |||||||||||||| ||||||||||||| |||||||    
T  23766902 tatgaaagaatatggaaataaagagtcttggactaaattgttcact 23766857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 23816750 - 23816705
Alignment:
Q  105 tatgaacgattatggaaataaagattcttggactaaatcgttcact 150  Q
    |||||| || |||||||||||||| ||||||||||||| |||||||    
T  23816750 tatgaaagaatatggaaataaagagtcttggactaaattgttcact 23816705  T

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