View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7228_high_1 (Length: 505)

Name: NF7228_high_1
Description: NF7228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7228_high_1
NF7228_high_1
[»] chr6 (6 HSPs)
chr6 (349-490)||(12843457-12843598)
chr6 (164-216)||(24968887-24968939)
chr6 (115-246)||(26270187-26270320)
chr6 (174-233)||(13248585-13248645)
chr6 (176-238)||(17352057-17352119)
chr6 (275-340)||(24968756-24968821)
[»] chr1 (3 HSPs)
chr1 (150-246)||(25426200-25426296)
chr1 (48-238)||(36977550-36977741)
chr1 (266-299)||(36758314-36758347)
[»] chr4 (7 HSPs)
chr4 (161-235)||(17264341-17264414)
chr4 (150-238)||(18631987-18632076)
chr4 (68-246)||(28572859-28573033)
chr4 (150-246)||(12215643-12215740)
chr4 (57-235)||(30242844-30243022)
chr4 (161-216)||(12880919-12880974)
chr4 (168-237)||(8928487-8928556)
[»] chr3 (2 HSPs)
chr3 (150-230)||(12839803-12839884)
chr3 (179-238)||(10951079-10951139)
[»] chr5 (5 HSPs)
chr5 (117-246)||(24543881-24544009)
chr5 (163-216)||(15609104-15609157)
chr5 (165-246)||(20593036-20593118)
chr5 (266-299)||(26271168-26271201)
chr5 (58-103)||(26455859-26455904)
[»] chr7 (2 HSPs)
chr7 (249-299)||(12865154-12865207)
chr7 (249-299)||(21546445-21546498)
[»] chr2 (4 HSPs)
chr2 (68-245)||(4451406-4451583)
chr2 (424-485)||(39166207-39166268)
chr2 (436-485)||(39202563-39202612)
chr2 (274-326)||(39527045-39527097)
[»] chr8 (1 HSPs)
chr8 (164-220)||(3863720-3863776)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 349 - 490
Target Start/End: Original strand, 12843457 - 12843598
Alignment:
Q  349 tgttcgcttttgtacttgtttcgagataaaggctatgcatttgtagtcaaccaagatggaacaaatttgttttgatcttctctatttccgtcaaatgtgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12843457 tgttcgcttttgtacttgtttcgagataaaggctatgcatttgtagtcaaccaagatggaacaaatttgttttgatgttctctatttccgtcaaatgtgt 12843556  T
Q  449 ttgcgacggagttttgttcccttttccttgcgatgatgttat 490  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12843557 ttgcgacggagttttgttcccttttccttgcgatgatgttat 12843598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 24968939 - 24968887
Alignment:
Q  164 atgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatgatttt 216  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||||||||    
T  24968939 atgtcttcccaattcttcatgaggtgtcttgctttgctgaattacatgatttt 24968887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 246
Target Start/End: Complemental strand, 26270320 - 26270187
Alignment:
Q  115 aatttcccaagcttgtaat-tttgtcagaggccttatgaatcttgaattcatgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatga- 212  Q
    |||| ||| |||||||||| ||| | ||||||||  |||||||| | | |||||||||  |||| || | ||||||||||||||| |  ||||||||||     
T  26270320 aattcccctagcttgtaatattttttagaggcctcttgaatcttcattccatgtcttcttaattctttaggaggtgtcttgctttgccgaattacatgat 26270221  T
Q  213 ttttcaatagaatacttacaaaacacgtaagaat 246  Q
    |||||||| ||||||||||||| ||| |||||||    
T  26270220 ttttcaattgaatacttacaaatcacctaagaat 26270187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 13248645 - 13248585
Alignment:
Q  174 aatttttcatgaggtgtcttgcttttctaaattacatga-ttttcaatagaatacttacaa 233  Q
    |||| |||||||||||||||||||| |  || ||||||| |||||||||||||||||||||    
T  13248645 aattcttcatgaggtgtcttgctttgccgaaatacatgatttttcaatagaatacttacaa 13248585  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 17352119 - 17352057
Alignment:
Q  176 tttttcatgaggtgtcttgcttttctaaattacatgattttcaatagaatacttacaaaacac 238  Q
    |||| |||||||||||||| ||| || |||||||||||||||| || |||||||  |||||||    
T  17352119 ttttccatgaggtgtcttgatttgctgaattacatgattttcactaaaatacttcaaaaacac 17352057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 24968821 - 24968756
Alignment:
Q  275 gaaaacattacaaaatgtcccttaagctataagaatcttatctaaaactccttttatttagttcaa 340  Q
    ||||||||||||||||||||||||  | ||||| | ||  |||||||||||| |||||||| ||||    
T  24968821 gaaaacattacaaaatgtcccttacaccataagcacctgttctaaaactcctcttatttaggtcaa 24968756  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 25426200 - 25426296
Alignment:
Q  150 tgaatcttgaattcatgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatgattttcaatagaatacttacaaaacacgtaagaat 246  Q
    |||||||| | | ||||||||||||||| |||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||| || |||||||    
T  25426200 tgaatctttattccatgtcttcccaattcttcatgaggtgtcttgctttgccgaattacatgcttttcaatagaatacttacaaaatacctaagaat 25426296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 36977550 - 36977741
Alignment:
Q  48 tttttgcccttttcttcatctttttgagcgctttcttcctccaaacttgtgttgggacctaggagaaaatttcccaagcttgtaattttgtcagaggcct 147  Q
    |||||||| |||||||| | ||||| || | | ||||||||||||||||| ||||||| | ||| |||||||| | | | ||||||||  | |||| | |    
T  36977550 tttttgcctttttcttcgttttttttagtgttgtcttcctccaaacttgttttgggacttgggacaaaatttctcgaacctgtaatttctttagagactt 36977649  T
Q  148 tatgaatcttgaattcatgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatga-ttttcaatagaatacttacaaaacac 238  Q
    | |||||||  | |||  ||||||| |||| ||||| |||||||||| ||| |  |||||||||| ||||||||| |||||||| |||||||    
T  36977650 tttgaatctccatttctcgtcttcctaattcttcataaggtgtcttgatttgccgaattacatgatttttcaataaaatacttataaaacac 36977741  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 36758347 - 36758314
Alignment:
Q  266 actcgatatgaaaacattacaaaatgtcccttaa 299  Q
    ||||||||||||||||| ||||||||||||||||    
T  36758347 actcgatatgaaaacataacaaaatgtcccttaa 36758314  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 17264341 - 17264414
Alignment:
Q  161 ttcatgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatgattttcaatagaatacttacaaaa 235  Q
    |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |  |||||||||||||||    
T  17264341 ttcatgtcttcc-aattcttcatgaggtgtcttgctttgctaaattacatgatttttaccagaatacttacaaaa 17264414  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 18632076 - 18631987
Alignment:
Q  150 tgaatcttgaattcatgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatga-ttttcaatagaatacttacaaaacac 238  Q
    |||||||| | | |||||||| |||||| ||||| | |||||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  18632076 tgaatcttcattccatgtctttccaattcttcataaagtgtcttgctttgccaaattacatgatttttcaatagaatacttacaaaacac 18631987  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 246
Target Start/End: Original strand, 28572859 - 28573033
Alignment:
Q  68 tttttgagcgctttcttcctccaaacttgtgttgggacctaggagaaaatttcccaagcttgtaattttgtcagaggccttatgaatcttgaattcatgt 167  Q
    |||||||| | ||||||||||||||||||| ||| ||| | ||| | ||||| || | | |||||| || ||||||||||  |||||||| | | |||||    
T  28572859 tttttgagtgttttcttcctccaaacttgtcttgtgactttggacataattttcccaacctgtaatgttttcagaggcctcttgaatcttcattccatgt 28572958  T
Q  168 cttcccaatttttcatgaggtgtcttgcttttctaaattacatgattttcaatagaatacttacaaaacacgtaagaat 246  Q
    ||| ||||||||||| |||| ||||| ||||    |||||     |||||||||||||||||||||||||| |||||||    
T  28572959 ctttccaatttttcaggaggcgtcttactttgtcgaatta----tttttcaatagaatacttacaaaacacctaagaat 28573033  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 12215740 - 12215643
Alignment:
Q  150 tgaatcttgaattcatgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatgatttt-caatagaatacttacaaaacacgtaagaat 246  Q
    |||||||| | | ||||| ||||||||| |||||||| ||||||| |||    ||| |||||||||| |||||||||||||||||||||| |||||||    
T  12215740 tgaatcttcattccatgtgttcccaattcttcatgagatgtcttgatttgtcgaataacatgatttttcaatagaatacttacaaaacacctaagaat 12215643  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 235
Target Start/End: Original strand, 30242844 - 30243022
Alignment:
Q  57 ttttcttcatctttttgagcgctttcttcctccaaacttgtgttgggacctaggagaaaatttcccaagcttgtaattttgtcagaggccttatgaatct 156  Q
    ||||||||| ||||||||| | ||||||||||||||||||| ||| ||     || ||||||| |||| |||||||| |  | ||||| ||  |||||||    
T  30242844 ttttcttcacctttttgagtgttttcttcctccaaacttgtcttgagattggagacaaaattttccaaacttgtaatatctttagaggtctcttgaatct 30242943  T
Q  157 tgaattc-atgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatga-ttttcaatagaatacttacaaaa 235  Q
    |  |||| ||||||| |||||| |||||||| ||| ||||||| | |||||| |||| ||||||| | |||||||||||||    
T  30242944 t--attcgatgtctttccaattcttcatgagatgttttgctttgcaaaattatatgatttttcaaaacaatacttacaaaa 30243022  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 12880919 - 12880974
Alignment:
Q  161 ttcatgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatgatttt 216  Q
    |||||||||||| || ||| |||||||||||||||||| |  ||||||||||||||    
T  12880919 ttcatgtcttccaaaatttccatgaggtgtcttgctttgccgaattacatgatttt 12880974  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 8928556 - 8928487
Alignment:
Q  168 cttcccaatttttcatgaggtgtcttgcttttctaaattacatgattttcaatagaatacttacaaaaca 237  Q
    |||||||||| || |||||||||||| |||| | |||||||||||||| ||||  ||||| || ||||||    
T  8928556 cttcccaattctttatgaggtgtcttactttgccaaattacatgatttacaatgaaatacataaaaaaca 8928487  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 12839803 - 12839884
Alignment:
Q  150 tgaatcttgaattcatgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatga-ttttcaatagaatactta 230  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||| | | || |  ||| ||||||||||||||||||    
T  12839803 tgaatcttcatttcatgtcttcccaatttttcatgaggtgtcttgctttgccatatgatgtgatttttcaatagaatactta 12839884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 10951079 - 10951139
Alignment:
Q  179 ttcatgaggtgtcttgcttttctaaattacatgatttt-caatagaatacttacaaaacac 238  Q
    ||||||||||||| |||||| |  |||||||||||||| ||||| |||||||||| |||||    
T  10951079 ttcatgaggtgtcctgctttgccgaattacatgattttacaatacaatacttacagaacac 10951139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 24544009 - 24543881
Alignment:
Q  117 tttcccaagcttgtaattttgtcagaggccttatgaatcttgaattcatgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatgatttt 216  Q
    |||||||| |||||||| || |||| |||||  |||||||| | ||||||||||||||||| ||||||| |||| || |||| | |||||| |  |||||    
T  24544009 tttcccaa-cttgtaatatt-tcaggggcctcttgaatcttcatttcatgtcttcccaattcttcatgaagtgttttactttaccaaattatagaatttt 24543912  T
Q  217 -caatagaatacttacaaaacacgtaagaat 246  Q
     ||||||| |||||||||||||| |||||||    
T  24543911 tcaatagattacttacaaaacacctaagaat 24543881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 15609157 - 15609104
Alignment:
Q  163 catgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatgatttt 216  Q
    ||||||||||||||| ||||| ||||||||||||||   |||||||||||||||    
T  15609157 catgtcttcccaattcttcataaggtgtcttgctttctcaaattacatgatttt 15609104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 20593036 - 20593118
Alignment:
Q  165 tgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatgatt-ttcaatagaatacttacaaaacacgtaagaat 246  Q
    |||||||| |||| ||||| |||| |||| |||| |   ||||||||||| |||||||||||||||||||| ||| |||||||    
T  20593036 tgtcttcctaattcttcataaggtctcttactttgccgtattacatgattgttcaatagaatacttacaaagcacctaagaat 20593118  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 26271168 - 26271201
Alignment:
Q  266 actcgatatgaaaacattacaaaatgtcccttaa 299  Q
    |||||||||||||||||||||||||| |||||||    
T  26271168 actcgatatgaaaacattacaaaatgacccttaa 26271201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 26455859 - 26455904
Alignment:
Q  58 tttcttcatctttttgagcgctttcttcctccaaacttgtgttggg 103  Q
    |||||||||||||||||| | |||||||||  ||||||||||||||    
T  26455859 tttcttcatctttttgagtgttttcttccttgaaacttgtgttggg 26455904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 12865154 - 12865207
Alignment:
Q  249 ggaagaactagaattgca---ctcgatatgaaaacattacaaaatgtcccttaa 299  Q
    ||||||||||||||| ||   ||||||||||||||||||||||||||| |||||    
T  12865154 ggaagaactagaattacatgactcgatatgaaaacattacaaaatgtctcttaa 12865207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 21546445 - 21546498
Alignment:
Q  249 ggaagaactagaattgca---ctcgatatgaaaacattacaaaatgtcccttaa 299  Q
    ||||||||||||||| ||   || ||||||||||||||||||||||||||||||    
T  21546445 ggaagaactagaattacatgacttgatatgaaaacattacaaaatgtcccttaa 21546498  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 245
Target Start/End: Original strand, 4451406 - 4451583
Alignment:
Q  68 tttttgagcgctttcttcctccaaacttgtgttgggacctaggagaaaatttcccaagcttgtaattttgtcagaggccttatgaatcttgaattcatgt 167  Q
    |||||||| | |||||||||| |||||||| ||||||  ||||| | |||||    | | |||||| |  ||||||||||  ||||| || | |||||||    
T  4451406 tttttgagtgttttcttcctcgaaacttgtcttgggatttaggatataattttttcaacgtgtaatgtcttcagaggcctcttgaatttttatttcatgt 4451505  T
Q  168 cttcccaatttttcatgaggtgtcttgcttttctaaattacatga-ttttcaatagaatacttacaaaacacgtaagaa 245  Q
    ||| || ||| || ||||||||||||| || ||  ||||  |||| |||||||||||||||| ||||||||| ||||||    
T  4451506 ctttccgattctttatgaggtgtcttgtttgtc-gaattgtatgatttttcaatagaatactcacaaaacacataagaa 4451583  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 485
Target Start/End: Complemental strand, 39166268 - 39166207
Alignment:
Q  424 tcttctctatttccgtcaaatgtgtttgcgacggagttttgttcccttttccttgcgatgat 485  Q
    |||||||| ||| | || |||||||| |||| || |||| ||||||||||||||||||||||    
T  39166268 tcttctctgttttcctcgaatgtgttcgcgatggcgtttcgttcccttttccttgcgatgat 39166207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 39202563 - 39202612
Alignment:
Q  436 ccgtcaaatgtgtttgcgacggagttttgttcccttttccttgcgatgat 485  Q
    ||||| |||||||| |||| || |||| ||||||||||||||||||||||    
T  39202563 ccgtcgaatgtgttcgcgatggtgtttcgttcccttttccttgcgatgat 39202612  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 39527045 - 39527097
Alignment:
Q  274 tgaaaacattacaaaatgtcccttaagctataagaatcttatctaaaactcct 326  Q
    |||||||| |||||| |||||||||| |||| |||| ||| ||||||||||||    
T  39527045 tgaaaacaatacaaagtgtcccttaaactatgagaaacttttctaaaactcct 39527097  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 3863720 - 3863776
Alignment:
Q  164 atgtcttcccaatttttcatgaggtgtcttgcttttctaaattacatgattttcaat 220  Q
    |||| ||||||||| |||||||||| ||||| ||| |  ||||||||||||||||||    
T  3863720 atgttttcccaattcttcatgaggtatcttgttttgccgaattacatgattttcaat 3863776  T

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