View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7228_high_3 (Length: 423)
Name: NF7228_high_3
Description: NF7228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7228_high_3 |
 | |
|
| [»] scaffold0180 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 931125 - 931521
Alignment:
| Q |
19 |
gtggcttctaccgtaacagttacatgatcccacacctccatttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
931125 |
gtggcttctaccgtaacagttacacgatcacacacctccatttttctttaattcaacacttatacaataccattagacttatatgtggtttctatatcaa |
931224 |
T |
|
| Q |
119 |
tattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctatccaaaacatatgactgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
931225 |
tattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaattcataaccttttggtttcctagtttctctatccaaaacatatgactgtt |
931324 |
T |
|
| Q |
219 |
aatctttttcatcattatttttatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
931325 |
aatctttttcatcattatttttatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagca |
931424 |
T |
|
| Q |
319 |
tcagctgcggcaattggaaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
931425 |
tcagctgcggcaattggaaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
931521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 10608167 - 10607770
Alignment:
| Q |
19 |
gtggcttctaccgtaacagttacatgatcccacacctccatttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
10608167 |
gtggcttctaccgtaacagttacacgatctcacacctccatttttctttaattccacacttatacaataccattagacttatatgtggtttctatatcaa |
10608068 |
T |
|
| Q |
119 |
tattaaaa-gaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctatccaaaacatatgactgt |
217 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
10608067 |
tattaaaaagaatcatcttttaccttagtcttcatccttatactcacaaaatccataaccttttggtttcctagtttctctatccagaacatatgactgt |
10607968 |
T |
|
| Q |
218 |
taatctttttcatcattatttttatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagc |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10607967 |
taatctttttcatcattattttcatcttaatacaaaacatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagc |
10607868 |
T |
|
| Q |
318 |
atcagctgcggcaattggaaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
415 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10607867 |
atcagctgcggcaattgggaagaaagagtggggaacaagtggatccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
10607770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 12590050 - 12589654
Alignment:
| Q |
19 |
gtggcttctaccgtaacagttacatgatcccacacctccatttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
12590050 |
gtggcttctaccgtaacagttacacgatctcacacctccatttttctttaattccacacttatacaataccattagacttatatgtggtttctatatcaa |
12589951 |
T |
|
| Q |
119 |
tattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctatccaaaacatatgactgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
12589950 |
tattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctagtttctctatccagaacatatgactgtt |
12589851 |
T |
|
| Q |
219 |
aatctttttcatcattatttttatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagca |
318 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12589850 |
aatctttttcatcattattttcatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagca |
12589751 |
T |
|
| Q |
319 |
tcagctgcggcaattggaaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
415 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12589750 |
tcagttgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
12589654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 22 - 415
Target Start/End: Original strand, 46764456 - 46764849
Alignment:
| Q |
22 |
gcttctaccgtaacagttacatgatcccacacctccatttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaatat |
121 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
46764456 |
gcttctaccgtaacagttacacgatctcacacctccatttttctttaattccacacttatacaatactattagacttatatgtggtttctatatcaatat |
46764555 |
T |
|
| Q |
122 |
taaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctatccaaaacatatgactgttaat |
221 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
46764556 |
taaaagaattatcttttattttagtcttcatccttatactcacaaaatccataaccttttggtttcctagtttctctatccataacatatgactgttaat |
46764655 |
T |
|
| Q |
222 |
ctttttcatcattatttttatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagcatca |
321 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46764656 |
ctttttcatcattattttcatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagcatca |
46764755 |
T |
|
| Q |
322 |
gctgcggcaattggaaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
415 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46764756 |
gttgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
46764849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 22 - 415
Target Start/End: Complemental strand, 25655483 - 25655091
Alignment:
| Q |
22 |
gcttctaccgtaacagttacatgatcccacacctccatttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaatat |
121 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
25655483 |
gcttctaccgtaacagttacacgatctcacacctccatttttctttaattccacacttatacaataccattagacttatatgtggtttctatatcaatat |
25655384 |
T |
|
| Q |
122 |
taaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctatccaaaacatatgactgttaat |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
25655383 |
taaaagaatcatcttttattttagtcttcatccttatactcacaaaatccataaccttttggtttcctagtttctctatccagaacatatgactgttaat |
25655284 |
T |
|
| Q |
222 |
ctttttcatcattatttttatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagcatca |
321 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25655283 |
ctttttcatcattattttcatcttaatacaaaatagctagctattaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagcatca |
25655184 |
T |
|
| Q |
322 |
gctgcggcaattggaaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
415 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25655183 |
gttgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaac-tggaacatggaatacaaatgaacaaatccagtagtataatc |
25655091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 236 - 415
Target Start/End: Original strand, 11680763 - 11680941
Alignment:
| Q |
236 |
tttttatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagcatcagctgcggcaattgg |
335 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11680763 |
ttttcatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaa-cagtatatgagatctttggaagcatcagctgcggcaattgg |
11680861 |
T |
|
| Q |
336 |
aaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
415 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
11680862 |
gaagaaagagtggggaacaagtagacccatgaaggaacatggaacatggaatacaaatgaacaaatcaaatagtataatc |
11680941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 236 - 415
Target Start/End: Original strand, 11689042 - 11689220
Alignment:
| Q |
236 |
tttttatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctttggaagcatcagctgcggcaattgg |
335 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11689042 |
ttttcatcttaatacaaaatatctagctactaattaaccaaaataactcatttttcaa-cagtatatgagatctttggaagcatcagctgcggcaattgg |
11689140 |
T |
|
| Q |
336 |
aaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc |
415 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
11689141 |
gaagaaagagtggggaacaagtagacccatgaaggaacatggaacatggaatacaaatgaacaaatcaaatagtataatc |
11689220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 11680477 - 11680659
Alignment:
| Q |
19 |
gtggcttctaccgtaacagttacatgatcccacacctccatttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaa |
118 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11680477 |
gtggcttctagagtaacagttacacgatctcacacctccatttttctttaattccacacttatacaataccattaaacttatatgtggtttctatatcaa |
11680576 |
T |
|
| Q |
119 |
tattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctatc |
201 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11680577 |
tgttaaaagaataatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctagtttctctatc |
11680659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 11688756 - 11688938
Alignment:
| Q |
19 |
gtggcttctaccgtaacagttacatgatcccacacctccatttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaa |
118 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11688756 |
gtggcttctagagtaacagttacacgatctcacacctccatttttctttaattccacacttatacaataccattaaacttatatgtggtttctatatcaa |
11688855 |
T |
|
| Q |
119 |
tattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctatc |
201 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11688856 |
tgttaaaagaataatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctagtttctctatc |
11688938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 52758562 - 52758423
Alignment:
| Q |
60 |
ttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaatattaaaagaatcatcttttatcttagtcttcatccttata |
159 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || || ||||||| ||||| |||||||||||||||||||||||||| | | | |||||||||||||| |
|
|
| T |
52758562 |
ttttctttaattcaacacttatacagtacaaatagac--atatgtgttttctctatcaatattaaaagaatcatcttttgtttaattcttcatccttata |
52758465 |
T |
|
| Q |
160 |
ctcacaaaatccataaccttttggtttcctaatttctctatc |
201 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||| |||||||| |
|
|
| T |
52758464 |
ctcacaaaatccataatctattggttttctaatctctctatc |
52758423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 363
Target Start/End: Complemental strand, 4371243 - 4371130
Alignment:
| Q |
249 |
acaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctt---tggaagcatcagctgcggcaattggaaagaaagag |
345 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4371243 |
acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagag |
4371148 |
T |
|
| Q |
346 |
tggggaacaagtggaccc |
363 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
4371147 |
tggggaacaggtggaccc |
4371130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 4363402 - 4363327
Alignment:
| Q |
291 |
caaacagtatatgagatctt---tggaagcatcagctgcggcaattggaaagaaagagtggggaacaagtggaccc |
363 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||| | |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4363402 |
caaacagtatatgagatcatccttggaagcaacagcaggagcaattgggaagaaagagtggggaacaagtggaccc |
4363327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 42655082 - 42655119
Alignment:
| Q |
100 |
tatgtggtttctatatcaatattaaaagaatcatcttt |
137 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
42655082 |
tatgtgttttctctatcaatattaaaagaatcatcttt |
42655119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 38741459 - 38741598
Alignment:
| Q |
60 |
ttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaatattaaaagaatcatcttttatcttagtcttcatccttata |
159 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || |||||| ||| ||||| |||||||||||||| ||||||||||||| | | |||||||| ||||| |
|
|
| T |
38741459 |
ttttctttaattcaacacttatacagtacaaatagacttatgtgt--tttctctatcaatattaaaataatcatcttttatttaattcttcatctttata |
38741556 |
T |
|
| Q |
160 |
ctcacaaaatccataaccttttggtttcctaatttctctatc |
201 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||||| |||||||| |
|
|
| T |
38741557 |
ctcacaaaattcataaccttttgattttctaatctctctatc |
38741598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 46739898 - 46739993
Alignment:
| Q |
106 |
gtttctatatcaatattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctatc |
201 |
Q |
| |
|
|||||| ||||||||| ||||| ||||| |||| | | | ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
46739898 |
gtttctctatcaatatcaaaagcatcatattttctttaattcttcatccttatactcacaaaatccataacattttggtttccaagtttctctatc |
46739993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 46721331 - 46721386
Alignment:
| Q |
146 |
tcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctatc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
46721331 |
tcttcatccttatactcacaaaatccataaccttttggttttctaatctctctatc |
46721386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 46719857 - 46719933
Alignment:
| Q |
60 |
ttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaatattaaaagaatcatctttt |
138 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || || ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
46719857 |
ttttctttaattcaacacttatacagtacaaatagac--atatgtgttttctctatcaatattaaaagaatcatctttt |
46719933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 37999640 - 37999677
Alignment:
| Q |
100 |
tatgtggtttctatatcaatattaaaagaatcatcttt |
137 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
37999640 |
tatgtgttttctctatcaatattaaaagaatcatcttt |
37999677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 49611412 - 49611273
Alignment:
| Q |
60 |
ttttctttaattcgacacttatacaatacaattaaacttatatgtggtttctatatcaatattaaaagaatcatcttttatcttagtcttcatccttata |
159 |
Q |
| |
|
||||||||||||| |||||||| || ||| | || |||||| ||| ||||| ||||||||||||||| ||||||||| | | | |||||||||||||| |
|
|
| T |
49611412 |
ttttctttaattcaacacttattcagtaccaatagacttatgtgt--tttctcgatcaatattaaaagattcatcttttgtttaattcttcatccttata |
49611315 |
T |
|
| Q |
160 |
ctcacaaaatccataaccttttggtttcctaatttctctatc |
201 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
49611314 |
ctcacaaaattcataaccttttggttttctaatatctctatc |
49611273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 22862 - 22763
Alignment:
| Q |
102 |
tgtggtttctatatcaatattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctatc |
201 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||| |||| | | | ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
22862 |
tgtggtttctctatcaatatcaaaagcatcatattttctttaattcttcatccttatactcacaaaatccataacattttggtttccaagtttctctatc |
22763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 29314824 - 29314924
Alignment:
| Q |
101 |
atgtggtttctatatcaatattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggtttcctaatttctctat |
200 |
Q |
| |
|
||||| ||||| ||||||||| |||||||| ||||||| | | |||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||| |
|
|
| T |
29314824 |
atgtgttttctctatcaatatcaaaagaataatcttttcttcaattcttcatccttatactcacaaaatccatgaccttttggttttctagtttttctat |
29314923 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
29314924 |
c |
29314924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 41224648 - 41224563
Alignment:
| Q |
101 |
atgtggtttctatatcaatattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggttt |
186 |
Q |
| |
|
||||| ||||| ||||||||| |||||||| ||||||| | | |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41224648 |
atgtgttttctctatcaatatcaaaagaataatcttttcttcaattcttcatccttatactcacaaaatccatgaccttttggttt |
41224563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 41092415 - 41092500
Alignment:
| Q |
101 |
atgtggtttctatatcaatattaaaagaatcatcttttatcttagtcttcatccttatactcacaaaatccataaccttttggttt |
186 |
Q |
| |
|
||||| ||||| ||||||||| |||||||| ||||||| | | |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41092415 |
atgtgttttctctatcaatatcaaaagaataatcttttcttcaattcttcatccttatactcacaaaatccatgaccttttggttt |
41092500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University