View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7228_high_6 (Length: 386)
Name: NF7228_high_6
Description: NF7228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7228_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 367
Target Start/End: Complemental strand, 17236026 - 17235667
Alignment:
| Q |
2 |
atatctaacacaacttgccaagttttttatattggattggtagtaaaagttccgtggagtcaaacatatcatcttaattttaacaaagaccattgaacat |
101 |
Q |
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| T |
17236026 |
atatctaacacaacttgccaagttttttatattggattggtagtaaaagttccgtggagtcaaacatatcatcttaattttaacaaaaaccattgaacat |
17235927 |
T |
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| Q |
102 |
tgaacattgaaatttaaacaaaatcacaatgtcaaagtttttgtaaaattcagagtgaatccaaacatgtactaaataggtagttggggtaggtgagtta |
201 |
Q |
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| T |
17235926 |
tgaa-------atttaaacaaaatcacaatgtcaaagtttttgtaaaattcagagtgaatccaaacatgtactaaataggtagttggggtaggtgagtta |
17235834 |
T |
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| Q |
202 |
acatgtgaagtgacaaagattccttctcaacataatgctaacaatagtaactatt-nnnnnnnnnnnnctatttatcgaatcaaaagcaagaagtgtgag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17235833 |
acatgtgaagtgacaaagattccttctcaacataatgctaacaatagtaactattaaaaaaaaaaatactatttatcgaatcaaaagcaagaagtgtgag |
17235734 |
T |
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| Q |
301 |
aaatgaaaagaaaatgcttcaagttgaactatatcaatttccaaatcaaaatgagaaataagacaaa |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17235733 |
aaatgaaaagaaaatgcttcaagttgaactatatcaatttccaaatcaaaacgagaaataagacaaa |
17235667 |
T |
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