View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7228_low_10 (Length: 309)
Name: NF7228_low_10
Description: NF7228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7228_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 35044073 - 35043794
Alignment:
| Q |
1 |
gtccgtatttatcggctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35044073 |
gtccgtatttatcggctagcttccctaaggtgacatgaggtggctgggatccacctaagaggtggaggtggccgatcaaaggccaagctccaccggcttc |
35043974 |
T |
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| Q |
101 |
tggtggtggtgtctttgaagctacactagtattaatgcggcggcttctcagtagccaaaagagaacgaaaagaaacaacaaagtggtgcaaatagtaaat |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043973 |
tgg---------------agctacactagtattaatgcggcggcttctcagtagccaaaagagaacgaaaagaaacaacaaagtggtgcaaatagtaaat |
35043889 |
T |
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| Q |
201 |
ggttgaagggtcgaaggtgaaagcaaattattcatcatttgcttggtgttagaaatggagtactatagctagcggtgtagtgtaatgtgtgatgt |
295 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043888 |
ggttgaagggtcgagggtgaaagcaaattattcatcatttgcttggtgttagaaatggagtactatagctagcggtgtagtgtaatgtgtgatgt |
35043794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 35019713 - 35019594
Alignment:
| Q |
1 |
gtccgtatttatcggctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttc |
100 |
Q |
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|||||||||| ||||||| || ||||||||||| |||||||| | ||| |||||||||||||||||||||||||| || ||||| | ||| | |||||| |
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| T |
35019713 |
gtccgtatttgtcggctaagtttcctaaggtgacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggccatgatccgccggcttc |
35019614 |
T |
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| Q |
101 |
tggtggtggtgtctttgaagcta |
123 |
Q |
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||||||||||||||||||| |
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| T |
35019613 |
---cggtggtgtctttgaagcta |
35019594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 35035911 - 35035791
Alignment:
| Q |
2 |
tccgtatttatcggctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttct |
101 |
Q |
| |
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||||||||| ||||||| || || ||||||| || |||| | | ||| |||||||||||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
35035911 |
tccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggccaagcgccagcagcttcg |
35035812 |
T |
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| Q |
102 |
ggtggtggtgtctttgaagct |
122 |
Q |
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|||||||||||| |||||||| |
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| T |
35035811 |
ggtggtggtgtcattgaagct |
35035791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 35029804 - 35029678
Alignment:
| Q |
1 |
gtccgtatttatcggctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttc |
100 |
Q |
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|||||||||| ||||||| || |||||||| || |||||||| | ||| ||||||||||||||||||||||| || || ||||| ||||| |||||||| |
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| T |
35029804 |
gtccgtatttgtcggctaagtttcctaaggtaacgtgaggtggttgggacccacctaagaggtggaggtggccaattaacggccatgctccgctggcttc |
35029705 |
T |
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| Q |
101 |
t------ggtggtggtgtctttgaagc |
121 |
Q |
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| |||||||||||||||||||| |
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| T |
35029704 |
tggcggcggtggtggtgtctttgaagc |
35029678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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