View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7228_low_11 (Length: 263)
Name: NF7228_low_11
Description: NF7228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7228_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 1035523 - 1035752
Alignment:
| Q |
19 |
gaattgtttcaaatgacatttgcagttttgtattgcactttgatatgatggtaaaatgcattgaatgcggtcgtaatttcggttatgatgccatgcacaa |
118 |
Q |
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| T |
1035523 |
gaattgtttcaaatgacatttgcagttttgtattggactttgatatgatggtaaaatgcattgaatgcggtcgtaatttcggttatgatgccatgcacaa |
1035622 |
T |
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| Q |
119 |
acatctaaaatattgatatcaagattcccataaacataatcttaattctctctagtgatatagtatttctttatcgcaattcttccactacttactaact |
218 |
Q |
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| T |
1035623 |
acatctaaaatattgatataaagaat-ccataaacataatcttaattctctctggtgata---tatttctttatcgcaattcttccactacttactaact |
1035718 |
T |
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| Q |
219 |
tcactatgattttatttgcataatccacaggttc |
252 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
1035719 |
tcactatgattttatttgcataatctacaggttc |
1035752 |
T |
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