View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7228_low_4 (Length: 434)
Name: NF7228_low_4
Description: NF7228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7228_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 418
Target Start/End: Original strand, 40466294 - 40466698
Alignment:
| Q |
10 |
aacctgtgatatgtgtggttgatggtgtataagcacggttatatggtatatataaaggcaaaaataagcataaagtttgaactcgtatttaccacatcat |
109 |
Q |
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| T |
40466294 |
aacctttgatatgagtggttgatggtgtataagcacggttatatggtatatataaaggcaaaaataagcataaagtttgaactcgtatttaccacatcat |
40466393 |
T |
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| Q |
110 |
taaaatgatgctgactcgtctatagggaaccaaggaaaacttgatccaatgtcttatctgtgtttgtttatgtgtttctactttaattactatggtcccc |
209 |
Q |
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| T |
40466394 |
taaaatgatgctgactcgtctatagggaaccaaggaaaacttgatccaatgtcttatctgtgtttg----tgtgtttctactttaattactatggtcccc |
40466489 |
T |
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| Q |
210 |
tctttaaccnnnnnnntctaaaaaccaaacacaattcgtggtcctatgtcaatatcattgtgnnnnnnnnnnnnnnnnnnnnnnnnnagtaaaataggta |
309 |
Q |
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| T |
40466490 |
tctttaaccaaaaaaatctaaaaaccaaacacaattcgtggtcctatgtcaatatcattgtgtttttattttattttttttccttttagtaaaataggta |
40466589 |
T |
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| Q |
310 |
ctccaattgtttcaaagacttgtgat-agttgtgacacccaatagatagccctttaattttattttccaagtcaattgaatgtgtcacttcaacttgtgt |
408 |
Q |
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| T |
40466590 |
ctccaattgtttcaaagacttgtgatgagttgtgacacccaatagatagccctttaattttaattt-caagtcaattgaatgtgtcacttcaacttgtgt |
40466688 |
T |
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| Q |
409 |
aagttcatgc |
418 |
Q |
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| T |
40466689 |
aagttcatgc |
40466698 |
T |
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