View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7228_low_6 (Length: 395)
Name: NF7228_low_6
Description: NF7228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7228_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 37008302 - 37008692
Alignment:
| Q |
1 |
acaaattatttgtttaaaactactagatccatgatgactaacatatagcagcatacatggaacacttaacacttcacacccacctatccacttatttaat |
100 |
Q |
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| T |
37008302 |
acaaattatttgtt----actactagatccatgatgactaacatatagcagcatacatggaacacttaacacttcacacccacctatccacttatttaat |
37008397 |
T |
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| Q |
101 |
ttaaggataataaaacttctacatgattcaagaagtacataaagaacaggtgcaacaagaggtatgaaaattgnnnnnnncacacatatattag------ |
194 |
Q |
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| T |
37008398 |
ttaaggataataaaacttctacatgattcaagaagtacataaagaacaggtacaacaagaggtatgaaaattgaaaaacacacacatatataagttgaac |
37008497 |
T |
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| Q |
195 |
-----------aggtatattagactttaatatagtaaaatttaagcagcattgatggcaattttcattccggactcgcagtgacccacaaagttgcaaat |
283 |
Q |
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| T |
37008498 |
cctaaattattaggtatattagactttaatatagtaaaatttaagcagcattgatggcaattttcattccggactcgcagtgacccacaaagttgcaaat |
37008597 |
T |
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| Q |
284 |
gaagtagttttgtcccctagcaagcctgatctgatcctttcctgacctatacacttttgctcctcttggagtcttgcaactatcataccctcctt |
378 |
Q |
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| T |
37008598 |
gaagtagttttgtcccctagcaagcctgatctgatcctttcctgacctatacacttttgctcctcttggagtcttgcaactatcataccctcctt |
37008692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 36901725 - 36901611
Alignment:
| Q |
226 |
aagcagcattgatggcaattttcattccggactcgcagtgacccacaaagttgcaaatgaagtagttttgtcccctagcaagcctgatctgatcctttcc |
325 |
Q |
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| T |
36901725 |
aagcagcattgatggcaattttcacaccagaaccgcagtgacctggaaaattgcacatgaagtagttttgtcccttagcaagcctgacccgatccttccc |
36901626 |
T |
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| Q |
326 |
tgacctatacacttt |
340 |
Q |
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| T |
36901625 |
tgaccgatacacttt |
36901611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 37011731 - 37011810
Alignment:
| Q |
87 |
tccacttatttaatttaaggataataaaacttctacatgattcaagaagtacataaagaacaggtgcaacaagaggtatgaaa |
169 |
Q |
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| T |
37011731 |
tccacttatttaatttaaggatac---aacttctacgtgattcaagaagtatataaagaacaggtacaagaagaggtatgaaa |
37011810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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