View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_high_10 (Length: 529)
Name: NF7229_high_10
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 4 - 366
Target Start/End: Original strand, 40961407 - 40961770
Alignment:
| Q |
4 |
atgtcgaagaatattttttaaaactaaaagcctgatcgtgaaatttgctttgtctaa-ctcgatctaacactcacagatataatgactacatgaaagcaa |
102 |
Q |
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| T |
40961407 |
atgtcaaaaaatattttttaaaactaaaagcctgatcttgaaatttgctttgtctaatctcgatctaacactcacagatataatgactacatgaaagcaa |
40961506 |
T |
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| Q |
103 |
gaaattggtaaatacggtgaattcaaattcatagtcatatgcatgcctgtattccaggactttgaatttcttcgtagaccgtgtccatcaccagaaggat |
202 |
Q |
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| T |
40961507 |
gaaattggtgaaggcggtgaattcaaattcatagtcatatgcatacctgtattccaggactttgaattttttcgtagaccgcgtccatcaccagaaggat |
40961606 |
T |
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| Q |
203 |
aaaatggacccaactcagtaaaagcacctcctccgatagaggaacatcctggacctagaaaattaaccaagttaattaattcccctccaataaagaacaa |
302 |
Q |
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| T |
40961607 |
aaaatggacccaattcagtaaaagcacctcctccaatagaggaacatcccggacctagaaaattaaccaagttaattaattcccctccaataaagaacaa |
40961706 |
T |
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| Q |
303 |
tttatttatgatccttgtaagatgatttgaatttgatgtaggcgttataaaaagttaacaaata |
366 |
Q |
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| T |
40961707 |
tttatttatgatccttgtaagatgatttgaatttgatgtaggcgttataaaaaattaacaaata |
40961770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 40972133 - 40972033
Alignment:
| Q |
168 |
atttcttcgtagaccgtgtccatcaccagaaggataaaatggacccaactcagtaaaagcacctcctccgatagaggaacatcctggacctagaaaatta |
267 |
Q |
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| T |
40972133 |
atttcttcgtaaaccacgtccatcaccggtaggataaaatggacccaattccgtaaaggcacctcctccaattgaggaacatcctggacctaaaaaatta |
40972034 |
T |
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| Q |
268 |
a |
268 |
Q |
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| T |
40972033 |
a |
40972033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 276
Target Start/End: Original strand, 30906229 - 30906353
Alignment:
| Q |
152 |
tattccaggactttgaatttcttcgtagaccgtgtccatcaccagaaggataaaatggacccaactcagtaaaagcacctcctccgatagaggaacatcc |
251 |
Q |
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||||||| ||| ||||||| |||||| ||| |||||||||| | |||| |||| |||||||| |||||||| ||||||||||| || |||||||| || |
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| T |
30906229 |
tattccaagacattgaattcgttcgtaaaccacgtccatcaccggcaggaaaaaacggacccaattcagtaaaggcacctcctccaatggaggaacaacc |
30906328 |
T |
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| Q |
252 |
tggacctagaaaattaaccaagtta |
276 |
Q |
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| T |
30906329 |
tggacctgaaaaattaacaaagtta |
30906353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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