View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7229_high_16 (Length: 405)
Name: NF7229_high_16
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 36445501 - 36445205
Alignment:
| Q |
18 |
cttgtcttttaaccaacttcatatgtataaatatgatccaaattatttacctagatagtgacaatgtacttacatatcttacaaaaaactcttcaaatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36445501 |
cttgtcttttaaccaacttcatatgtataaatatgatccaaattatttacctagatagtgacaatgtacttacatatcttacaaaaaactcttcaaatta |
36445402 |
T |
|
| Q |
118 |
tttgtctcctaactttactcccaaccaaccatatttttgtttgaattataaaccttctcattaaaacataaactttctttcttccaattataaatattct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36445401 |
tttgtctcctaactttactcccaaccaaccatatttttgtttgaattataaaccttctcattaaaacataaactttctttcttccaattataaatattct |
36445302 |
T |
|
| Q |
218 |
atcaacaaagaaaacataattgtggcactcctttcatttcttaatataggcttttttggcaagaaaattgatcaatacatacaaaaagttgggtttct |
315 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36445301 |
atcaacaaagaaaacataattgtggtactcctttcatttcttaatataggct-ttttggcaagaaaattgatcaatacatacaaaaagttgggtttct |
36445205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University