View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_high_18 (Length: 346)
Name: NF7229_high_18
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 1455668 - 1455348
Alignment:
| Q |
9 |
gtcatgtcacaggttattttgcgtacaatgtaaagttccatggcatgaaggactcaactgtcaacaatttcaacgaaaactagcatgctccaataaaaca |
108 |
Q |
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| T |
1455668 |
gtcatgtcacatgttattttgcgtacaatgtaaagttccatggcatgaaggactcaactgtcaacaatttcaacgaaaactagcatgttccaataaaaca |
1455569 |
T |
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| Q |
109 |
tacatgattgttgattcccaaaacagtaccgttccaaagaagagaagttctccctttgaaggccgtgacaacgatgaaaagaagaaggctaagaagaaag |
208 |
Q |
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| T |
1455568 |
tacatgattgttgattcccaaaaca---ccgttccaaagaagagaagttctccctttgaaggccgtgacaacgatgaaaagaagaaggcgaagaagaaag |
1455472 |
T |
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| Q |
209 |
acgcgatcccagttgattctaaccaagcatcttatcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaaatcaaaggagaaagcaaccgt |
308 |
Q |
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| T |
1455471 |
acgcgatcgcagttgattctaaccaagcatcttatcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaaatcgaaggagaaagcaaccgt |
1455372 |
T |
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| Q |
309 |
tgagtccggttgtaaatgttcatc |
332 |
Q |
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| T |
1455371 |
tgagtccggtcgtaaatgttcatc |
1455348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 1451754 - 1451709
Alignment:
| Q |
242 |
atcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaa |
287 |
Q |
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| T |
1451754 |
atcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaa |
1451709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 33532361 - 33532321
Alignment:
| Q |
13 |
tgtcacaggttattttgcgtacaatgtaaagttccatggca |
53 |
Q |
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| T |
33532361 |
tgtcataggttattttgtgtgcaatgtaaagttccatggca |
33532321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 16868986 - 16869026
Alignment:
| Q |
13 |
tgtcacaggttattttgcgtacaatgtaaagttccatggca |
53 |
Q |
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| T |
16868986 |
tgtcataggttattttgtgtgcaatgtaaagttccatggca |
16869026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 19314957 - 19314989
Alignment:
| Q |
33 |
acaatgtaaagttccatggcatgaaggactcaa |
65 |
Q |
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| T |
19314957 |
acaatgtaaagttccatggcatgaaggattcaa |
19314989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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