View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_high_28 (Length: 267)
Name: NF7229_high_28
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 29725023 - 29725261
Alignment:
| Q |
15 |
acatcaggaaccgacctgctggaaagaaatgtggaagtaagtaactactaattattatgtaattatagatttttggagttttctttatttgaacaattgt |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29725023 |
acattaggaaccgacctgctggaaagaaatgtggaagtaagtaactactaattattatgtaattttagatttttggagttttctttatttgaacaattgt |
29725122 |
T |
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| Q |
115 |
gtaatgtaattaaccttgtcctttttatattttatttacagggtacacacttccttgaaaccaaagcaggaaaataatatatgtcatatgcagtatctga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29725123 |
gtaatgtaattaaccttgtcctttttatattttatttacagggtacacacttccttgaaaccaaagcaggaaaataatatatgtgatatgcagtatctga |
29725222 |
T |
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| Q |
215 |
catattagagagctaaataaattctgtaacgtgacattt |
253 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
29725223 |
catattagagagctaaataaattctgtaacatgacattt |
29725261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 29707262 - 29707371
Alignment:
| Q |
149 |
tttacagggtacacacttccttgaaaccaaagcaggaaaataatata-----tgtcatatgcagtatctgacatattagagagctaaataaattctgtaa |
243 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||||| | ||| |||||||||||||||||||| ||||| |
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| T |
29707262 |
tttacagggtacacacttccttgaaacctaagcaggaaaataatacaatacatgtgatatgcagtatttaacagattagagagctaaataaattatgtaa |
29707361 |
T |
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| Q |
244 |
cgtgacattt |
253 |
Q |
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| || ||||| |
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| T |
29707362 |
catggcattt |
29707371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 29706810 - 29706854
Alignment:
| Q |
15 |
acatcaggaaccgacctgctggaaagaaatgtggaagtaagtaac |
59 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
29706810 |
acattaggaaccgacctgctggaaagaaatgaggaagtaagtaac |
29706854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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