View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_high_29 (Length: 264)
Name: NF7229_high_29
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_high_29 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 32248901 - 32248647
Alignment:
| Q |
8 |
gatggacatcatgttcaactttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcact |
107 |
Q |
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| T |
32248901 |
gatggaaatcatgttcaactttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcttaatcctaatta-attaacacccaaaattcact |
32248803 |
T |
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| Q |
108 |
actataatttgcaacaaactaacaaatttattgatagataaagaaatacaataaacatcttggggggactagaccaaaacccaagaagtaggataaatcc |
207 |
Q |
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| T |
32248802 |
actataatttgcaacaaactaacaaatttattgatagataattaaatacaataaacatcttgggag-actagaccaaaacccaagaagtaggataaatcc |
32248704 |
T |
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| Q |
208 |
tcacgaaggaaaagagtgcaattcaataacaaaactagcaacaacaagaccaaactc |
264 |
Q |
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| T |
32248703 |
tcacgaaggaatagagtgcaattcaataacaaaactagcaacaacaagaccaaactc |
32248647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 32236620 - 32236485
Alignment:
| Q |
52 |
attagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcactactataatttgcaacaaactaacaaatttattgatagataaaga |
151 |
Q |
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| T |
32236620 |
attagaagaaaaacttgatatcataatcctaattagattaacacccaaaattcactactataatttgcaacaaactaacaaatttattgatagagaaaga |
32236521 |
T |
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| Q |
152 |
aatacaataaacatcttggggggactagaccaaaac |
187 |
Q |
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| T |
32236520 |
tatacaataaacatcttggggggactagaccaaaac |
32236485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 32255158 - 32254943
Alignment:
| Q |
15 |
atcatgttcaactttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcactac-tata |
113 |
Q |
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| T |
32255158 |
atcatgttcaactttgcaaatattagagtgcatggacatcagaagaaaaagttgacatcctaat------taagttgacacccaaaattcactacctatc |
32255065 |
T |
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| Q |
114 |
atttgcaacaaactaacaaatttattgatagataaagaaatacaataaacatcttggggggactagaccaaaacccaagaagtaggataaatcctcacga |
213 |
Q |
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| T |
32255064 |
atttgcaacaccctaacaaatttattgaca--taaagaaatacaataaaaatcttggaagggatagaccaaaacccaagaagtaggataaccgctcatga |
32254967 |
T |
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| Q |
214 |
aggaaaagagtgcaattcaataac |
237 |
Q |
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| T |
32254966 |
agaaaaagagtgcaattcaataac |
32254943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 23203089 - 23202952
Alignment:
| Q |
16 |
tcatgttcaactttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcactac-tataa |
114 |
Q |
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| T |
23203089 |
tcatgttcaactttgcaaaaattagagtgcatgggcattagatgatgagcttgacatcctaac------taggttgagatcctaaattcattacctatca |
23202996 |
T |
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| Q |
115 |
tttgcaacaaactaacaaatttattgatagataaagaaatacaa |
158 |
Q |
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| T |
23202995 |
tttgcaacatcctaacaaatttattgataaataaagaaatacaa |
23202952 |
T |
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