View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7229_high_5 (Length: 664)

Name: NF7229_high_5
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7229_high_5
NF7229_high_5
[»] chr3 (1 HSPs)
chr3 (16-648)||(49824016-49824645)


Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 16 - 648
Target Start/End: Original strand, 49824016 - 49824645
Alignment:
Q  16 acatcatgggaaataaaagaaggagctccaatccacgatacacaaaaagcataagttgacactacttcttaaactatgtctgaatcaacaatactcaatt 115  Q
    ||||||| | ||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||    
T  49824016 acatcatcgaaaataaaaggaggagcttcaatccacgatacacaaaaagcacaagttgacactactt---aaactatgtctgaatcaacaatactcaatt 49824112  T
Q  116 agatgcaagacagacgaacaaaggcatagtcaactgacatgggttttttaaactttcgaagtcttaatgcgcttagacactggcataggtttgttaattg 215  Q
    ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49824113 agatgcaaggcagacaaacaaaggcatagtcaactgacatgggatttttaaactttcgaagtcttaatgcgcttagacactggcataggtttgttaattg 49824212  T
Q  216 acccttcgccgacgtcaggtttgccaaaatcagagcccacactatcagttgtcctcttgccaactcccttactctttggtgnnnnnnnattgtccatccg 315  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||       ||||||||||||    
T  49824213 acccttcgccgacttcaggtttgtcaaaatcagagcccacactatcagttgtcctcttgccaactcccttgctcttcggtgttttttcattgtccatccg 49824312  T
Q  316 cttgccaattaccttactgcttggtgtcttgtcactgtccttagtattttccactcccttacggctaggtgttatgtcttcacaatccttattccttccc 415  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49824313 cttgccaattacctcactgcttggtgtcttgtcattgtccttagtattttccactcccttacggctaggtgttatgtcttcacaatccttattccttccc 49824412  T
Q  416 actcccttactgcttggtgtattctcgttgtccttcatcttgttatcagattttgtagaatcaccgccctcaatttgaatatgctgcagttgacatacat 515  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49824413 actcccttactgcttggtgtattctcattgtccttcatcttgttatcagattttgtagaatcaccgccctcaatttgaatatgctgcagttgacatacat 49824512  T
Q  516 gtgaaaataagcaagaataccatctaaaataaggacttttatacttcaaaatggttataaacaaaagtgagacaaatacagttggtgttttataatccac 615  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49824513 gtgaaaataagcaagatgaccatctaaaataaggacttttatacttcaaaatggttataaacaaaagtgagacaaatacagttggtgttttataatccac 49824612  T
Q  616 acaaaatgatttaaccaaaggatagcaagatat 648  Q
    ||||||||||||||||| |||||||||||||||    
T  49824613 acaaaatgatttaaccagaggatagcaagatat 49824645  T

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