View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_high_6 (Length: 646)
Name: NF7229_high_6
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_high_6 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 229 - 620
Target Start/End: Complemental strand, 9883002 - 9882617
Alignment:
| Q |
229 |
taatcagtagaggtgatgtggtttgtgt--gtttgatgagtgatttttgttcttttagaaaaacgagcaagaagtgtatgcaagtaaatctcacaagcga |
326 |
Q |
| |
|
||||||||||| ||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9883002 |
taatcagtagatgtgatgtagtctgtgtatgtttgatgagtgatttttgttcttgtagaaaaacgagcaagaagtgtatgcaagtaaatctcacaagcga |
9882903 |
T |
|
| Q |
327 |
catatgataaaggtcggaa-ccatcattctgtcaagaggtgacacacttttgacttgattcaattaaaatctaagatttgttcaatgcatcttttatctt |
425 |
Q |
| |
|
||| |||||||| | || ||||||||| || |||||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||| ||| |
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|
| T |
9882902 |
catgtgataaagtacaaaaaccatcattcggttaagaggtgacacacttttgaattgattcaaataagattgaagatttgttcaatgcatcttttacctt |
9882803 |
T |
|
| Q |
426 |
gcaattgcatgagaggatgcttggatattaatgtttagtcacttgttgccttggtgtcttttgcaggctcaaatttgtggaactgattgtgtgttgaaat |
525 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
9882802 |
acaattgcatgagagtatg-ttggatattaatgtttagtctcttgttgccttggtttcttttatgggctcaaatttgtggaactgagtgtgtgttgaaat |
9882704 |
T |
|
| Q |
526 |
ttagacatttaacttgttagttcagcacttcagctagccctaaggatatagtagccattcccacaagtgggtagaattgcatattctaattctcc |
620 |
Q |
| |
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||||| |||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9882703 |
ttagatatttaagctgttagtt--------cagctagccctgaggatgtagtagccattcccacaagtgggtagaattgcatattctaattctcc |
9882617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 9883170 - 9883068
Alignment:
| Q |
117 |
caaaaggtagtgaaacttatgcatgagactattcatgttgttgtgcttgatttcttttccgcaattataacttagaaaggtatcggggcagagtttgtat |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| |||||||||| || |||||||||||| |
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| T |
9883170 |
caaaaggtagtgaaacctatgcatgagactattcatgttgttatgcttggtttcttttccgcagttataactttgaaaggtatcaggtcagagtttgtat |
9883071 |
T |
|
| Q |
217 |
aca |
219 |
Q |
| |
|
||| |
|
|
| T |
9883070 |
aca |
9883068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 229 - 625
Target Start/End: Original strand, 20423474 - 20423862
Alignment:
| Q |
229 |
taatcagtagaggtgatgtggtttgtgtgt--ttgatgagtgatttttgttcttttagaaaaacgagcaagaagtgtatgcaagtaaatctcacaagcga |
326 |
Q |
| |
|
||||||||||| ||||||| || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20423474 |
taatcagtagatgtgatgtagtctgtgtgtgtttgatgagtgatttttgttcttgtagaaaaacgagcaagaagtgtatgcatgtaaatctcacaagcga |
20423573 |
T |
|
| Q |
327 |
catatgataaaggtcggaaccatcattctgtcaagaggtgacacacttttgacttgattcaattaaaatctaagatttgttcaatgcatcttttatcttg |
426 |
Q |
| |
|
||| |||||||| || || | ||||| |||||||||| |||||||||||| ||||||||| ||| || |||||||||||||||||||||||| ||| |
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|
| T |
20423574 |
catgtgataaagtacgaaaac--cattcggtcaagaggtaacacacttttgaattgattcaaataagattgaagatttgttcaatgcatcttttacctta |
20423671 |
T |
|
| Q |
427 |
caattgcatgagaggatgcttggatattaatgtttagtcacttgttgccttggtgtcttttgcaggctcaaatttgtggaactgattgtgtgttgaaatt |
526 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| || ||||||||||| |
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| T |
20423672 |
caattgcatgagagtatggttggatattaatgtttagtctcttgttgccttggtttcttttatgggctcaaatttgtggaactgagtgagtgttgaaatt |
20423771 |
T |
|
| Q |
527 |
tagacatttaacttgttagttcagcacttcagctagccctaaggatatagtagccattcccacaagtgggtagaattgcatattctaattctccacctc |
625 |
Q |
| |
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|||| |||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20423772 |
tagatatttaagctgttag--------ttcagctagcccttaggatgtagtagccattcccacaagtgggtagaattgcatattctaattctcctcctc |
20423862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 20423304 - 20423408
Alignment:
| Q |
115 |
agcaaaaggtagtgaaacttatgcatgagactattcatgttgttgtgcttgatttcttttccgcaattataacttagaaaggtatcggggcagagtttgt |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| || |||||||||| |
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| T |
20423304 |
agcaaaaggtagtgaaacctatgcatgagactattcatgttgttatgcttggtttcttttccgcagttataacttagaaaggtatcaggtcagagtttgt |
20423403 |
T |
|
| Q |
215 |
ataca |
219 |
Q |
| |
|
||||| |
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|
| T |
20423404 |
ataca |
20423408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 20423100 - 20423146
Alignment:
| Q |
34 |
atgaccaaagttcatcaataaatttgcagtttcactattgtttaata |
80 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
20423100 |
atgaccaaggttcatcaataaatttgaagtttcactgttgtttaata |
20423146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 4651725 - 4651610
Alignment:
| Q |
115 |
agcaaaaggtagtgaaacttatgcatgagactattcatgttgttgtgcttgatttcttttccgcaattataacttagaaaggtatcggggcagagtttgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4651725 |
agcaaaaggtagtgaaacttatgcatgagactattcatgttgttgtgcttgatttcttttccgcaattataacttagaaaggtattggggcagagtttgt |
4651626 |
T |
|
| Q |
215 |
atacataactgtgata |
230 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
4651625 |
atacataattgtgata |
4651610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4652033 - 4651941
Alignment:
| Q |
1 |
aatgaacatacaaaatttaaaccttcaaactcaatgaccaaagttcatcaataaatttgcagtttcactattgtttaataaaggctatatcat |
93 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
4652033 |
aatgaacatacaaaatctaaaccttcaaactcaatgaccaaggttcatcaataaatttgcagtttcactgttgtttaatagaggctatatcat |
4651941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 4651556 - 4651513
Alignment:
| Q |
228 |
ataatcagtagaggtgatgtggtttgtgtgtttgatgagtgatt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4651556 |
ataatcagtagaggtgatgtggtttgtgtgtttgatgagtgatt |
4651513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 37077619 - 37077731
Alignment:
| Q |
119 |
aaaggtagtgaaacttatgcatgagactattcatgttgttgtgcttgatttcttttccgcaattataacttagaaaggtatc-ggggcagagtttgtata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||| |||||||||||| |
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|
| T |
37077619 |
aaaggtagtgaaacttatgcatgagactattcatgttgttgtgcttggtttcttttccgcagttataacttggaaaggtatcaggggtagagtttgtata |
37077718 |
T |
|
| Q |
218 |
cataactgtgata |
230 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
37077719 |
cataattgtgata |
37077731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 30800300 - 30800259
Alignment:
| Q |
399 |
agatttgttcaatgcatcttttatcttgcaattgcatgagag |
440 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30800300 |
agatttgttcaatgcatcttttgtcttgcaattgcatgagag |
30800259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 19354 - 19308
Alignment:
| Q |
34 |
atgaccaaagttcatcaataaatttgcagtttcactattgtttaata |
80 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
19354 |
atgaccaaggttcatcaataaatttgcagtttcattgttgtttaata |
19308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 22068668 - 22068633
Alignment:
| Q |
115 |
agcaaaaggtagtgaaacttatgcatgagactattc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22068668 |
agcaaaaggtagtgaaacttatgcatgatactattc |
22068633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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