View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7229_high_8 (Length: 587)
Name: NF7229_high_8
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 5175038 - 5174657
Alignment:
| Q |
20 |
gtctaaggtcattttttgcttagcttggactattgaaatttactaactgctagtgactacatctattatctttttgtttttaactcattattgccatttt |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5175038 |
gtctaaggtcattttttgctt-----ggactattgaaatttactaactgctagtgactacatctattatctttttgtttttaactcattattgccatttt |
5174944 |
T |
|
| Q |
120 |
tattgtcaataataatgattactactgtgttgcctaaggtaatgtttagagtaagacaaggggagggatttaagtatatatttttaactcctatggctat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174943 |
tattgtcaataataatgattactactgtgttgcctaaggtaatgtttagagtaagacaaggggagggatttaagtatatatttttaactcctatggctat |
5174844 |
T |
|
| Q |
220 |
gtttctcctaccatca---ctactctgccggattcatgcaga-ttatgatttgtgttttttaacataagaaacaaaga-tctgagaaaccagagaatatt |
314 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5174843 |
gtttctcctaccatcaaatctactctgccggattcatgcagatttatgatttgtgttttttaacataagaaacaaagattctgagaaaccagagaatatt |
5174744 |
T |
|
| Q |
315 |
ggaattgagactgtacaaatgatacaagtattttttctcatacgcaa----catgcatgagttagataaatgttcattttacatatg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5174743 |
ggaattgagactgtacaaatgatacaagtattttttctcatacgcaacatgcatgcatgagttagataaatgttcattttaaatatg |
5174657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 487 - 533
Target Start/End: Complemental strand, 5174650 - 5174604
Alignment:
| Q |
487 |
tattattgtctacttgctccaattattaacagcaacatatcttatct |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174650 |
tattattgtctacttgctccaattattaacagcaacatatcttatct |
5174604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University