View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_15 (Length: 463)
Name: NF7229_low_15
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 168 - 446
Target Start/End: Complemental strand, 39642781 - 39642504
Alignment:
| Q |
168 |
tttctatttggttgaataatatataattatagtttacttcaactctgaatttttaactcgtcaattacttaatcttaagtcaaacaagttgagttgccta |
267 |
Q |
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| T |
39642781 |
tttctatttggttgaataatatataattatagtttacttcaactctgaatttttaactcgtcaattacttaatcttaagtcaaacaagttgagttgccta |
39642682 |
T |
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| Q |
268 |
ctctctattttacataataaaatgtttttaaaaagttatatattttnnnnnnnnnttaacttgttcgtttcactcattttccaaacaatagaatgaaagt |
367 |
Q |
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| T |
39642681 |
ctctctattttacacaataaaatgtttttaaaaagttatatatttt-aaaaaaatttaacttgttcgtttcattcattttccaaacaatagaatgaaaat |
39642583 |
T |
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| Q |
368 |
attattttgtcatatcataaaatactccaacgatacgatgaaatctctgtttcatttcactttatttcattatgtttca |
446 |
Q |
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| T |
39642582 |
attattttgtcatatcataaaatactccaacgatacgatgaaatctctatttcatttcactttatttcattatgtttca |
39642504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 39642897 - 39642770
Alignment:
| Q |
22 |
ctgatatatctctgatctacacacaagcagtgacgcagtatatctttccaacataaaatctatatataactgttttctttttcgagaatgaaataaaact |
121 |
Q |
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| T |
39642897 |
ctgatatatctctgatctacacacaagcagtgacgcagtatatctttccaacataaaatctctatataactgttttctttttcgagaatgaaatacaact |
39642798 |
T |
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| Q |
122 |
ttttatttggttgaattttctatttggt |
149 |
Q |
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| T |
39642797 |
ttttatttggttgaattttctatttggt |
39642770 |
T |
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