View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_16 (Length: 446)
Name: NF7229_low_16
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 93 - 432
Target Start/End: Complemental strand, 7884892 - 7884528
Alignment:
| Q |
93 |
ttttcttgagttaccatgttagagctacgaagagaaaaaagtaacctagcaaggcaataaaagcatcggcttgtcgagccatttcggccttgcattggtg |
192 |
Q |
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| T |
7884892 |
ttttcttgagttaccatgttagagctacgaagagaaaaaagtaacctggcaaggcaataaaagcatcggcctgtcgagccatttcggccttgcgttggtg |
7884793 |
T |
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| Q |
193 |
catgtccgatacagcccgaacttcacctacactctcccctattatctgactcctcgtaatattagtatttactattatgtaacacaagatataaataaaa |
292 |
Q |
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| T |
7884792 |
catgtccgatacagcccgaacttcacctacactctcccctattatctgactcctcgtaatattagtatttactattatgtaacacaagatataaataaaa |
7884693 |
T |
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| Q |
293 |
cataa----------------------ttgtcggtatgtattatggttattaaattttaattaataattccttt---nnnnnnncatagtcatgattcac |
367 |
Q |
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| T |
7884692 |
cataattgaagggaccaattatttatgttgtcggaatgtattatggttattaaattttaattaataattcctttaaaaaaaaaacatagtcatgattcac |
7884593 |
T |
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| Q |
368 |
cacagggtttaacgcaagtagttggtgtacaaaatgtgcggatatcgtaaatcttgagatattga |
432 |
Q |
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| T |
7884592 |
cacagggtttaacgcaagtagttggtgtacaaagtgtgcggatatcgtaaatcttgagatattga |
7884528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 7885130 - 7885052
Alignment:
| Q |
18 |
cttccaaggtgtcatatccacctataagaataggaaaattattgttataaaaactgcaatgagataaaacgtacgtttt |
96 |
Q |
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| T |
7885130 |
cttccaaggtgtcatatccacctataagaataggaaaattattgttataaaaactgcaatgagataaaacgtacgtttt |
7885052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 53033270 - 53033206
Alignment:
| Q |
143 |
aaggcaataaaagcatcggcttgtcgagccatttcggccttgcattggtgcatgtccgatacagc |
207 |
Q |
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| T |
53033270 |
aaggcaataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagc |
53033206 |
T |
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