View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_18 (Length: 386)
Name: NF7229_low_18
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 143 - 378
Target Start/End: Original strand, 8054152 - 8054388
Alignment:
| Q |
143 |
aacaaaaaaccacttataattttagaagtttacttaatttattggaagtgtactcttgatagagacaaaatgtgtgtttttattt-atttatacgtttga |
241 |
Q |
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| T |
8054152 |
aacaaaaaaccacttataattttagaagtttacttaatttattggaagtgtactcttgatagagacaaaatgtgtgttttttttttatttatacgtttga |
8054251 |
T |
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| Q |
242 |
agttatgatgaaggacaaggaaagtttctcctaaattagtatggccattcctcctatctatgcaagtactgcaacacatagaataagataaggacgcaca |
341 |
Q |
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| T |
8054252 |
agttatgatgaaggacaaggaaagtttctcctaaattagtatggctagtcctcctatctatgcaagtattgcaacacaaagaataagattaggacgcaca |
8054351 |
T |
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| Q |
342 |
ttgcactgtaattttcacactgaattccgcaacacca |
378 |
Q |
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| T |
8054352 |
ttgcactgtaattttcacactgaattccgcaacacca |
8054388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 8054000 - 8054077
Alignment:
| Q |
6 |
agattctaatatccattacaatttcaacaatttaaaataatatgatagtgccagagtttccagatatcattaattaga |
83 |
Q |
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| T |
8054000 |
agattctaatatccattacaatttcaacaatttaaaataatatgatagtggcagagtttccagatatcattaattaga |
8054077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 8055519 - 8055481
Alignment:
| Q |
6 |
agattctaatatccattacaatttcaacaatttaaaata |
44 |
Q |
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| T |
8055519 |
agattctaatattcattacaatttcaacaatctaaaata |
8055481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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