View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7229_low_2 (Length: 795)
Name: NF7229_low_2
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_2 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 750; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 11 - 776
Target Start/End: Complemental strand, 2765836 - 2765071
Alignment:
| Q |
11 |
atcatgttcttgatgaatcaactcattacagcagcgatctacgccccactgcaaaacagttatggaggcctccaattggtgttttagaactcggagtgct |
110 |
Q |
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| T |
2765836 |
atcatgttcttgatgaatcaactcattacagcagcgatctacgccccactgcaaaacagttatggaggcctccaattggtgttttagaactcggagtgct |
2765737 |
T |
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| Q |
111 |
gaatgcaataggactccacccaatgaaaacaagggatggtagaggcacttctgatacatattgtgtagcaaaatacggtcacaaatgggtcagaacaagg |
210 |
Q |
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| T |
2765736 |
gaatgcaataggactccacccaatgaaaacaagggacggtagaggcacttctgatacatattgtgtagcaaaatatggtcacaaatgggtcagaacaagg |
2765637 |
T |
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| Q |
211 |
acacttgttgacaacttgtcgccaaaatacaatgagcaatacacttgggaggtctttgatcctgccacagtcctcacagtaggtgtctttgacaattccc |
310 |
Q |
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| T |
2765636 |
acacttgttgacaacttgtcgccaaaatacaacgagcaatacacttgggaggtctttgatcctgccacagtcctcacagtaggtgtctttgacaattccc |
2765537 |
T |
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| Q |
311 |
aaatcagtggtgaaaagggtcacaacaaagacttgaaaattgggaaggtgagaattcgcatatcgactcttgaaacaggacggatttacacacactcata |
410 |
Q |
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| T |
2765536 |
aaatcagtggtgaaaagggtcacaacaaagacttgaaaattgggaaggtgagaattcgcatatcgactcttgaaacaggacggatttacacacactcgta |
2765437 |
T |
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| Q |
411 |
tccattgcttgttcttcacccaactggtgttaagaaaatgggcgaacttcacttggcaataagattctcatgcacttcttttgcaaacatgctttaccta |
510 |
Q |
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| T |
2765436 |
tccattgcttgttcttcacccaactggtgttaagaaaatgggcgaacttcacttggcaataagattctcatgcacttcttttgcaaacatgctttaccta |
2765337 |
T |
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| Q |
511 |
tactcaaaaccacttctcccgaaaatgcattacgttaggccattcgcagtcatgcaactcgatatgctacgccaccaagcagtaaacatagtggcagcgc |
610 |
Q |
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| T |
2765336 |
tactcaaaaccacttctcccgaaaatgcattacgttaggccattcgcagtcatgcaactcgatatgctacgccaccaagcagtaaacatagtggcagcgc |
2765237 |
T |
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| Q |
611 |
ggctcggtcgagcagagccaccacttcgtaaagaagtggttgaatacatgtcagatgttgattcacatttatggagcatgcgccgtagtaaggcaaactt |
710 |
Q |
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| T |
2765236 |
ggctcggtcgagcagagccaccacttcgtaaagaagtggttgaatacatgtcagatgttgattcacatttatggagcatgcgccgtagtaaggcaaactt |
2765137 |
T |
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| Q |
711 |
ctttcgcctcatgacagttttctctggtgtgtttgcagttggaaaatggttaggtgatatctgcat |
776 |
Q |
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| T |
2765136 |
ctttcgcctcatgacagttttctctggtgtgtttgcagttggaaaatggttaggtgatatctgcat |
2765071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 467
Target Start/End: Complemental strand, 13543 - 13473
Alignment:
| Q |
397 |
tacacacactcatatccattgcttgttcttcacccaactggtgttaagaaaatgggcgaacttcacttggc |
467 |
Q |
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| T |
13543 |
tacacacattcctatccactcctagttcttcacccaactggtgtgaagaaaatgggtgaaattcaattggc |
13473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 11703574 - 11703519
Alignment:
| Q |
232 |
ccaaaatacaatgagcaatacacttgggaggtctttgatcctgccacagtcctcac |
287 |
Q |
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| T |
11703574 |
ccaaaatacaatgagcaatacacatgggaagtttttgatccagctacagttctcac |
11703519 |
T |
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