View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7229_low_20 (Length: 339)
Name: NF7229_low_20
Description: NF7229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7229_low_20 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 2226034 - 2225696
Alignment:
| Q |
1 |
agttaggggggaaaacttttgagtaaattcgcctcatgaaactgtaggagtccaacatttacacccatgaaatttgcaaatggaaaataaaaaccttgat |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2226034 |
agttagggggaaaaacttttgagtaaattcgcctcatgaaactgtaggagtccaacatttacacccatgaaatttgcaaatggaaaataaaaactttgat |
2225935 |
T |
|
| Q |
101 |
tttgaattgtattgaacaacttggtccttctcctaacttgtatctactctacggccaaatttgtttcagaattatggcactgacaaataaattagtcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2225934 |
tttgaattgtattgaacaacttggtccttctcctaacttgtatctaatctacggtcaaaattgtttcagaattatggcactgacaaataaattagtcatt |
2225835 |
T |
|
| Q |
201 |
gagttatatcccttattgtcaaattgatccgcccctacacacagataattaatagtttgagaaaattgaatagttaaatatggtcacatgtgtcggcgtg |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
2225834 |
gagttatatcgcttattgtcaaattgatccgcccctacacacagataattaatagtttgagaaaattgaatagttgaatatggtcaaatgtgtcggcgtg |
2225735 |
T |
|
| Q |
301 |
gtgtcgggcttggtattgtgtatactgacttaccaacac |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2225734 |
gtgtcgggcttggtattgtgtatactgacttaccaacac |
2225696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 2218489 - 2218398
Alignment:
| Q |
244 |
gataattaatagtttgagaaaattgaatagttaaatatggtcacatgtgtcggcgtggtgtcgggcttggtattgtgtatactgacttacca |
335 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| |||||||||||||||||||| || ||||| || ||||| |||||||||||||||||||| |
|
|
| T |
2218489 |
gataagtaatagtttgagagaattgaatagttgaatatggtcacatgtgtcggtgttgtgtcagggttggtgttgtgtatactgacttacca |
2218398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 10241145 - 10241032
Alignment:
| Q |
99 |
attttgaattgtattgaacaacttggtccttctcctaacttgtatctactctacggcc--aaatttgtttcagaattatggcactgacaaataaattagt |
196 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||| | | | ||||| | ||||| || || |||||| ||||| |||||||||||||| |
|
|
| T |
10241145 |
attttgaattatattgaacaacttggtccttctgctaacttgtgtgttatttacggtcaaaaattagtaacaaaattattgcacttacaaataaattagt |
10241046 |
T |
|
| Q |
197 |
cattgagttatatc |
210 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
10241045 |
ctttgagttatatc |
10241032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 22771585 - 22771660
Alignment:
| Q |
70 |
aaatttgcaaatggaaaataaaaaccttgattttgaattgtattgaacaacttggtccttctcctaacttgtatcta |
146 |
Q |
| |
|
|||||||||||| ||||| ||||| | ||||||||||| | |||| |||||| ||||||| |||||||||||||| |
|
|
| T |
22771585 |
aaatttgcaaatagaaaaaaaaaatccagattttgaattatgttgagcaactttgtccttc-actaacttgtatcta |
22771660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University